Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trav1A0A075B5Z4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC25.98■■□□□ 1.75
Trav1A0A075B5Z4 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC25.98■■□□□ 1.75
Trav1A0A075B5Z4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC25.9■■□□□ 1.74
Trav1A0A075B5Z4 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Trav1A0A075B5Z4 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC25.76■■□□□ 1.71
Trav1A0A075B5Z4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.75■■□□□ 1.71
Trav1A0A075B5Z4 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
Trav1A0A075B5Z4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC25.72■■□□□ 1.71
Trav1A0A075B5Z4 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trav1A0A075B5Z4 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Trav1A0A075B5Z4 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trav1A0A075B5Z4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.68■■□□□ 1.7
Trav1A0A075B5Z4 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
Trav1A0A075B5Z4 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trav1A0A075B5Z4 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC25.62■■□□□ 1.69
Trav1A0A075B5Z4 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trav1A0A075B5Z4 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
Trav1A0A075B5Z4 Rab21-202ENSMUST00000218831 843 ntBASIC25.55■■□□□ 1.68
Trav1A0A075B5Z4 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Trav1A0A075B5Z4 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Trav1A0A075B5Z4 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Trav1A0A075B5Z4 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Trav1A0A075B5Z4 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trav1A0A075B5Z4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Trav1A0A075B5Z4 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Trav1A0A075B5Z4 Zfp131-207ENSMUST00000224946 1783 ntBASIC25.43■■□□□ 1.66
Trav1A0A075B5Z4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Trav1A0A075B5Z4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trav1A0A075B5Z4 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC25.4■■□□□ 1.66
Trav1A0A075B5Z4 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trav1A0A075B5Z4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Trav1A0A075B5Z4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25.36■■□□□ 1.65
Trav1A0A075B5Z4 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Trav1A0A075B5Z4 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trav1A0A075B5Z4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
Trav1A0A075B5Z4 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC25.33■■□□□ 1.65
Trav1A0A075B5Z4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.64
Trav1A0A075B5Z4 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trav1A0A075B5Z4 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trav1A0A075B5Z4 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
Trav1A0A075B5Z4 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC25.28■■□□□ 1.64
Trav1A0A075B5Z4 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Trav1A0A075B5Z4 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
Trav1A0A075B5Z4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Trav1A0A075B5Z4 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
Trav1A0A075B5Z4 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Trav1A0A075B5Z4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC25.19■■□□□ 1.62
Trav1A0A075B5Z4 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC25.19■■□□□ 1.62
Trav1A0A075B5Z4 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Trav1A0A075B5Z4 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
Trav1A0A075B5Z4 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
Trav1A0A075B5Z4 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Trav1A0A075B5Z4 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Trav1A0A075B5Z4 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Trav1A0A075B5Z4 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
Trav1A0A075B5Z4 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Trav1A0A075B5Z4 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Trav1A0A075B5Z4 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Trav1A0A075B5Z4 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
Trav1A0A075B5Z4 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Trav1A0A075B5Z4 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Trav1A0A075B5Z4 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
Trav1A0A075B5Z4 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Trav1A0A075B5Z4 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trav1A0A075B5Z4 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trav1A0A075B5Z4 Gm2415-204ENSMUST00000190235 2004 ntBASIC24.96■■□□□ 1.59
Trav1A0A075B5Z4 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Trav1A0A075B5Z4 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Trav1A0A075B5Z4 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Trav1A0A075B5Z4 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
Trav1A0A075B5Z4 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Trav1A0A075B5Z4 Gm25262-201ENSMUST00000174934 133 ntBASIC24.88■■□□□ 1.57
Trav1A0A075B5Z4 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
Trav1A0A075B5Z4 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
Trav1A0A075B5Z4 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC24.8■■□□□ 1.56
Trav1A0A075B5Z4 AL845457.1-201ENSMUST00000197244 68 ntBASIC24.79■■□□□ 1.56
Trav1A0A075B5Z4 Gm6658-202ENSMUST00000209493 1885 ntBASIC24.79■■□□□ 1.56
Trav1A0A075B5Z4 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Trav1A0A075B5Z4 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Trav1A0A075B5Z4 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Trav1A0A075B5Z4 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
Trav1A0A075B5Z4 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Trav1A0A075B5Z4 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Trav1A0A075B5Z4 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Trav1A0A075B5Z4 Mipep-204ENSMUST00000225043 1548 ntBASIC24.67■■□□□ 1.54
Trav1A0A075B5Z4 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Trav1A0A075B5Z4 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Trav1A0A075B5Z4 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
Trav1A0A075B5Z4 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
Trav1A0A075B5Z4 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC24.58■■□□□ 1.53
Trav1A0A075B5Z4 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
Trav1A0A075B5Z4 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC24.57■■□□□ 1.52
Trav1A0A075B5Z4 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Trav1A0A075B5Z4 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Trav1A0A075B5Z4 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC24.55■■□□□ 1.52
Trav1A0A075B5Z4 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Trav1A0A075B5Z4 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Trav1A0A075B5Z4 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Trav1A0A075B5Z4 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 75.8 ms