Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC22.28■■□□□ 1.16
Nkx2-4Q9EQM3 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Nkx2-4Q9EQM3 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Nkx2-4Q9EQM3 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Nkx2-4Q9EQM3 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Nkx2-4Q9EQM3 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
Nkx2-4Q9EQM3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22.26■■□□□ 1.15
Nkx2-4Q9EQM3 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC22.26■■□□□ 1.15
Nkx2-4Q9EQM3 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Nkx2-4Q9EQM3 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Nkx2-4Q9EQM3 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Nkx2-4Q9EQM3 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Nkx2-4Q9EQM3 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Nkx2-4Q9EQM3 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Nkx2-4Q9EQM3 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC22.25■■□□□ 1.15
Nkx2-4Q9EQM3 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nkx2-4Q9EQM3 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nkx2-4Q9EQM3 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC22.24■■□□□ 1.15
Nkx2-4Q9EQM3 Gm21168-201ENSMUST00000199646 1096 ntBASIC22.24■■□□□ 1.15
Nkx2-4Q9EQM3 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC22.24■■□□□ 1.15
Nkx2-4Q9EQM3 Spcs1-207ENSMUST00000228767 1008 ntBASIC22.24■■□□□ 1.15
Nkx2-4Q9EQM3 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Nkx2-4Q9EQM3 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC22.24■■□□□ 1.15
Nkx2-4Q9EQM3 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Nkx2-4Q9EQM3 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
Nkx2-4Q9EQM3 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nkx2-4Q9EQM3 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Nkx2-4Q9EQM3 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nkx2-4Q9EQM3 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nkx2-4Q9EQM3 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Nkx2-4Q9EQM3 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nkx2-4Q9EQM3 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Nkx2-4Q9EQM3 Gm43017-201ENSMUST00000198296 752 ntBASIC22.22■■□□□ 1.15
Nkx2-4Q9EQM3 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nkx2-4Q9EQM3 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nkx2-4Q9EQM3 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC22.21■■□□□ 1.15
Nkx2-4Q9EQM3 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Nkx2-4Q9EQM3 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Nkx2-4Q9EQM3 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Nkx2-4Q9EQM3 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Nkx2-4Q9EQM3 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC22.2■■□□□ 1.14
Nkx2-4Q9EQM3 Gm43137-201ENSMUST00000198052 594 ntBASIC22.2■■□□□ 1.14
Nkx2-4Q9EQM3 AC116713.1-201ENSMUST00000215074 430 ntBASIC22.2■■□□□ 1.14
Nkx2-4Q9EQM3 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Nkx2-4Q9EQM3 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Nkx2-4Q9EQM3 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Nkx2-4Q9EQM3 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Nkx2-4Q9EQM3 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Nkx2-4Q9EQM3 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Nkx2-4Q9EQM3 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC22.19■■□□□ 1.14
Nkx2-4Q9EQM3 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
Nkx2-4Q9EQM3 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nkx2-4Q9EQM3 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Nkx2-4Q9EQM3 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC22.18■■□□□ 1.14
Nkx2-4Q9EQM3 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nkx2-4Q9EQM3 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Nkx2-4Q9EQM3 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nkx2-4Q9EQM3 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Nkx2-4Q9EQM3 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nkx2-4Q9EQM3 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC22.17■■□□□ 1.14
Nkx2-4Q9EQM3 Mir7075-201ENSMUST00000184187 82 ntBASIC22.17■■□□□ 1.14
Nkx2-4Q9EQM3 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC22.17■■□□□ 1.14
Nkx2-4Q9EQM3 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Nkx2-4Q9EQM3 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Nkx2-4Q9EQM3 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC22.16■■□□□ 1.14
Nkx2-4Q9EQM3 Gm5874-201ENSMUST00000096101 508 ntBASIC22.16■■□□□ 1.14
Nkx2-4Q9EQM3 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Nkx2-4Q9EQM3 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nkx2-4Q9EQM3 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
Nkx2-4Q9EQM3 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nkx2-4Q9EQM3 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nkx2-4Q9EQM3 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nkx2-4Q9EQM3 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nkx2-4Q9EQM3 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Nkx2-4Q9EQM3 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Nkx2-4Q9EQM3 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC22.14■■□□□ 1.13
Nkx2-4Q9EQM3 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Nkx2-4Q9EQM3 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Nkx2-4Q9EQM3 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Nkx2-4Q9EQM3 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Nkx2-4Q9EQM3 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC22.13■■□□□ 1.13
Nkx2-4Q9EQM3 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC22.13■■□□□ 1.13
Nkx2-4Q9EQM3 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Nkx2-4Q9EQM3 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Nkx2-4Q9EQM3 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Nkx2-4Q9EQM3 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC22.12■■□□□ 1.13
Nkx2-4Q9EQM3 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Nkx2-4Q9EQM3 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Nkx2-4Q9EQM3 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
Nkx2-4Q9EQM3 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Nkx2-4Q9EQM3 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Nkx2-4Q9EQM3 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Nkx2-4Q9EQM3 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Nkx2-4Q9EQM3 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC22.11■■□□□ 1.13
Nkx2-4Q9EQM3 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Nkx2-4Q9EQM3 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Nkx2-4Q9EQM3 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Nkx2-4Q9EQM3 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Nkx2-4Q9EQM3 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC22.1■■□□□ 1.13
Nkx2-4Q9EQM3 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC22.1■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms