Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trav6-3Q5R1E6 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6-3Q5R1E6 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trav6-3Q5R1E6 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav6-3Q5R1E6 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.1■□□□□ 0.33
Trav6-3Q5R1E6 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6-3Q5R1E6 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trav6-3Q5R1E6 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6-3Q5R1E6 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6-3Q5R1E6 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Trav6-3Q5R1E6 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6-3Q5R1E6 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav6-3Q5R1E6 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav6-3Q5R1E6 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
Trav6-3Q5R1E6 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav6-3Q5R1E6 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav6-3Q5R1E6 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav6-3Q5R1E6 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav6-3Q5R1E6 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav6-3Q5R1E6 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC17.08■□□□□ 0.32
Trav6-3Q5R1E6 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav6-3Q5R1E6 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trav6-3Q5R1E6 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav6-3Q5R1E6 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav6-3Q5R1E6 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Trav6-3Q5R1E6 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav6-3Q5R1E6 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6-3Q5R1E6 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6-3Q5R1E6 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6-3Q5R1E6 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC17.07■□□□□ 0.32
Trav6-3Q5R1E6 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav6-3Q5R1E6 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6-3Q5R1E6 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6-3Q5R1E6 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6-3Q5R1E6 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6-3Q5R1E6 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav6-3Q5R1E6 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trav6-3Q5R1E6 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Trav6-3Q5R1E6 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6-3Q5R1E6 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6-3Q5R1E6 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Trav6-3Q5R1E6 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6-3Q5R1E6 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6-3Q5R1E6 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6-3Q5R1E6 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trav6-3Q5R1E6 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav6-3Q5R1E6 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Nsd1-206ENSMUST00000224918 1001 ntBASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trav6-3Q5R1E6 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6-3Q5R1E6 Gm43403-201ENSMUST00000198011 1786 ntBASIC17.02■□□□□ 0.32
Trav6-3Q5R1E6 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6-3Q5R1E6 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6-3Q5R1E6 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav6-3Q5R1E6 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav6-3Q5R1E6 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-3Q5R1E6 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC17.01■□□□□ 0.31
Trav6-3Q5R1E6 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-3Q5R1E6 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Trav6-3Q5R1E6 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-3Q5R1E6 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-3Q5R1E6 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-3Q5R1E6 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-3Q5R1E6 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav6-3Q5R1E6 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms