Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
Usp47Q8BY87 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Usp47Q8BY87 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Usp47Q8BY87 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Usp47Q8BY87 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
Usp47Q8BY87 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC30.76■■■□□ 2.51
Usp47Q8BY87 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Usp47Q8BY87 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Usp47Q8BY87 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Usp47Q8BY87 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC30.75■■■□□ 2.51
Usp47Q8BY87 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Usp47Q8BY87 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Usp47Q8BY87 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC30.75■■■□□ 2.51
Usp47Q8BY87 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC30.75■■■□□ 2.51
Usp47Q8BY87 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC30.74■■■□□ 2.51
Usp47Q8BY87 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC30.73■■■□□ 2.51
Usp47Q8BY87 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Usp47Q8BY87 Gm11847-201ENSMUST00000125165 1119 ntBASIC30.73■■■□□ 2.51
Usp47Q8BY87 Gm42501-201ENSMUST00000200220 1026 ntBASIC30.73■■■□□ 2.51
Usp47Q8BY87 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC30.73■■■□□ 2.51
Usp47Q8BY87 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
Usp47Q8BY87 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
Usp47Q8BY87 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
Usp47Q8BY87 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Usp47Q8BY87 Gm8093-201ENSMUST00000128935 1892 ntBASIC30.72■■■□□ 2.51
Usp47Q8BY87 AC115037.1-201ENSMUST00000223391 2173 ntBASIC30.72■■■□□ 2.51
Usp47Q8BY87 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp47Q8BY87 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp47Q8BY87 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC30.71■■■□□ 2.51
Usp47Q8BY87 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp47Q8BY87 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp47Q8BY87 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp47Q8BY87 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp47Q8BY87 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Usp47Q8BY87 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.51
Usp47Q8BY87 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Usp47Q8BY87 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC30.7■■■□□ 2.51
Usp47Q8BY87 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Usp47Q8BY87 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
Usp47Q8BY87 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Usp47Q8BY87 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC30.69■■■□□ 2.5
Usp47Q8BY87 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Usp47Q8BY87 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Usp47Q8BY87 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
Usp47Q8BY87 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
Usp47Q8BY87 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Usp47Q8BY87 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC30.67■■■□□ 2.5
Usp47Q8BY87 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
Usp47Q8BY87 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Usp47Q8BY87 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC30.66■■■□□ 2.5
Usp47Q8BY87 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Usp47Q8BY87 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Usp47Q8BY87 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Usp47Q8BY87 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
Usp47Q8BY87 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Usp47Q8BY87 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Usp47Q8BY87 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
Usp47Q8BY87 Gm9959-201ENSMUST00000068277 390 ntBASIC30.66■■■□□ 2.5
Usp47Q8BY87 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Usp47Q8BY87 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Usp47Q8BY87 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
Usp47Q8BY87 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.5
Usp47Q8BY87 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.64■■■□□ 2.5
Usp47Q8BY87 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
Usp47Q8BY87 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.5
Usp47Q8BY87 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC30.64■■■□□ 2.5
Usp47Q8BY87 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC30.64■■■□□ 2.5
Usp47Q8BY87 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
Usp47Q8BY87 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC30.64■■■□□ 2.49
Usp47Q8BY87 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Usp47Q8BY87 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC30.63■■■□□ 2.49
Usp47Q8BY87 Rps24-207ENSMUST00000224568 714 ntBASIC30.63■■■□□ 2.49
Usp47Q8BY87 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Usp47Q8BY87 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC30.61■■■□□ 2.49
Usp47Q8BY87 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Usp47Q8BY87 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC30.61■■■□□ 2.49
Usp47Q8BY87 Gm5131-201ENSMUST00000212776 1238 ntBASIC30.61■■■□□ 2.49
Usp47Q8BY87 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC30.61■■■□□ 2.49
Usp47Q8BY87 Gm14117-201ENSMUST00000122417 843 ntBASIC30.6■■■□□ 2.49
Usp47Q8BY87 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC30.6■■■□□ 2.49
Usp47Q8BY87 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC30.6■■■□□ 2.49
Usp47Q8BY87 Gm45102-201ENSMUST00000207427 857 ntBASIC30.6■■■□□ 2.49
Usp47Q8BY87 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Usp47Q8BY87 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC30.59■■■□□ 2.49
Usp47Q8BY87 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Usp47Q8BY87 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Usp47Q8BY87 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC30.59■■■□□ 2.49
Usp47Q8BY87 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Usp47Q8BY87 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Usp47Q8BY87 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
Usp47Q8BY87 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC30.58■■■□□ 2.49
Usp47Q8BY87 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC30.58■■■□□ 2.49
Usp47Q8BY87 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Usp47Q8BY87 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
Usp47Q8BY87 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
Usp47Q8BY87 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Usp47Q8BY87 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
Usp47Q8BY87 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Usp47Q8BY87 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Usp47Q8BY87 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms