Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.58■□□□□ 0.57
Col7a1Q63870 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col7a1Q63870 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
Col7a1Q63870 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.58■□□□□ 0.56
Col7a1Q63870 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.58■□□□□ 0.56
Col7a1Q63870 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col7a1Q63870 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC18.57■□□□□ 0.56
Col7a1Q63870 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col7a1Q63870 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Col7a1Q63870 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col7a1Q63870 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col7a1Q63870 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Col7a1Q63870 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC18.56■□□□□ 0.56
Col7a1Q63870 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC18.56■□□□□ 0.56
Col7a1Q63870 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC18.56■□□□□ 0.56
Col7a1Q63870 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col7a1Q63870 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col7a1Q63870 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Col7a1Q63870 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col7a1Q63870 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col7a1Q63870 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col7a1Q63870 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.55■□□□□ 0.56
Col7a1Q63870 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.55■□□□□ 0.56
Col7a1Q63870 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.55■□□□□ 0.56
Col7a1Q63870 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col7a1Q63870 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col7a1Q63870 Gm42569-201ENSMUST00000200539 472 ntBASIC18.54■□□□□ 0.56
Col7a1Q63870 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.54■□□□□ 0.56
Col7a1Q63870 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col7a1Q63870 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col7a1Q63870 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col7a1Q63870 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.54■□□□□ 0.56
Col7a1Q63870 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col7a1Q63870 Wdr70-203ENSMUST00000227371 1130 ntBASIC18.53■□□□□ 0.56
Col7a1Q63870 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col7a1Q63870 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col7a1Q63870 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col7a1Q63870 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col7a1Q63870 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.53■□□□□ 0.56
Col7a1Q63870 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.53■□□□□ 0.56
Col7a1Q63870 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col7a1Q63870 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col7a1Q63870 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col7a1Q63870 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Col7a1Q63870 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.55
Col7a1Q63870 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.51■□□□□ 0.55
Col7a1Q63870 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col7a1Q63870 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col7a1Q63870 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Col7a1Q63870 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col7a1Q63870 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col7a1Q63870 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col7a1Q63870 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 Mir7075-201ENSMUST00000184187 82 ntBASIC18.5■□□□□ 0.55
Col7a1Q63870 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Col7a1Q63870 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col7a1Q63870 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col7a1Q63870 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC18.49■□□□□ 0.55
Col7a1Q63870 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col7a1Q63870 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Col7a1Q63870 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col7a1Q63870 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
Col7a1Q63870 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col7a1Q63870 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.49■□□□□ 0.55
Col7a1Q63870 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col7a1Q63870 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col7a1Q63870 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col7a1Q63870 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col7a1Q63870 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.48■□□□□ 0.55
Col7a1Q63870 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col7a1Q63870 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col7a1Q63870 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
Col7a1Q63870 Gm10493-201ENSMUST00000097270 612 ntBASIC18.48■□□□□ 0.55
Col7a1Q63870 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col7a1Q63870 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col7a1Q63870 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col7a1Q63870 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Col7a1Q63870 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col7a1Q63870 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Col7a1Q63870 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col7a1Q63870 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col7a1Q63870 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
Col7a1Q63870 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Col7a1Q63870 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.45■□□□□ 0.54
Col7a1Q63870 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.45■□□□□ 0.54
Col7a1Q63870 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col7a1Q63870 Gm8093-201ENSMUST00000128935 1892 ntBASIC18.45■□□□□ 0.54
Col7a1Q63870 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col7a1Q63870 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.44■□□□□ 0.54
Col7a1Q63870 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Col7a1Q63870 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms