Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cdx2P43241 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cdx2P43241 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Cdx2P43241 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cdx2P43241 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cdx2P43241 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.64■□□□□ 0.89
Cdx2P43241 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cdx2P43241 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cdx2P43241 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cdx2P43241 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Cdx2P43241 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cdx2P43241 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC20.63■□□□□ 0.89
Cdx2P43241 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cdx2P43241 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.63■□□□□ 0.89
Cdx2P43241 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
Cdx2P43241 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cdx2P43241 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cdx2P43241 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cdx2P43241 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Cdx2P43241 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.62■□□□□ 0.89
Cdx2P43241 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cdx2P43241 Gm27454-201ENSMUST00000185090 204 ntBASIC20.62■□□□□ 0.89
Cdx2P43241 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.62■□□□□ 0.89
Cdx2P43241 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.62■□□□□ 0.89
Cdx2P43241 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Cdx2P43241 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cdx2P43241 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cdx2P43241 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cdx2P43241 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
Cdx2P43241 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cdx2P43241 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdx2P43241 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdx2P43241 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
Cdx2P43241 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
Cdx2P43241 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cdx2P43241 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.59■□□□□ 0.89
Cdx2P43241 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Cdx2P43241 Golgb1-201ENSMUST00000023534 498 ntBASIC20.59■□□□□ 0.89
Cdx2P43241 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cdx2P43241 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Cdx2P43241 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cdx2P43241 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cdx2P43241 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cdx2P43241 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cdx2P43241 Gm45417-201ENSMUST00000209533 758 ntBASIC20.58■□□□□ 0.89
Cdx2P43241 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cdx2P43241 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cdx2P43241 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Cdx2P43241 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cdx2P43241 Gm10620-201ENSMUST00000098379 1332 ntBASIC20.57■□□□□ 0.88
Cdx2P43241 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cdx2P43241 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Cdx2P43241 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cdx2P43241 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.57■□□□□ 0.88
Cdx2P43241 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Cdx2P43241 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC20.56■□□□□ 0.88
Cdx2P43241 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.56■□□□□ 0.88
Cdx2P43241 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC20.56■□□□□ 0.88
Cdx2P43241 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC20.56■□□□□ 0.88
Cdx2P43241 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Cdx2P43241 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx2P43241 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cdx2P43241 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cdx2P43241 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Cdx2P43241 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Cdx2P43241 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cdx2P43241 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cdx2P43241 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.54■□□□□ 0.88
Cdx2P43241 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cdx2P43241 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cdx2P43241 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.54■□□□□ 0.88
Cdx2P43241 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC20.54■□□□□ 0.88
Cdx2P43241 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cdx2P43241 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Cdx2P43241 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cdx2P43241 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cdx2P43241 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cdx2P43241 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
Cdx2P43241 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Cdx2P43241 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Cdx2P43241 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdx2P43241 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Cdx2P43241 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdx2P43241 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Cdx2P43241 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdx2P43241 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cdx2P43241 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
Cdx2P43241 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cdx2P43241 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Cdx2P43241 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms