Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cd40lgP27548 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cd40lgP27548 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.58■□□□□ 0.72
Cd40lgP27548 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Cd40lgP27548 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cd40lgP27548 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cd40lgP27548 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC19.58■□□□□ 0.72
Cd40lgP27548 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Cd40lgP27548 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Cd40lgP27548 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cd40lgP27548 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cd40lgP27548 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Cd40lgP27548 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cd40lgP27548 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Cd40lgP27548 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cd40lgP27548 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cd40lgP27548 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Cd40lgP27548 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cd40lgP27548 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Cd40lgP27548 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.56■□□□□ 0.72
Cd40lgP27548 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cd40lgP27548 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Cd40lgP27548 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Cd40lgP27548 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.56■□□□□ 0.72
Cd40lgP27548 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cd40lgP27548 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
Cd40lgP27548 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cd40lgP27548 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.55■□□□□ 0.72
Cd40lgP27548 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.55■□□□□ 0.72
Cd40lgP27548 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC19.55■□□□□ 0.72
Cd40lgP27548 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.55■□□□□ 0.72
Cd40lgP27548 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cd40lgP27548 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cd40lgP27548 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cd40lgP27548 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Cd40lgP27548 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.54■□□□□ 0.72
Cd40lgP27548 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cd40lgP27548 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cd40lgP27548 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cd40lgP27548 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC19.54■□□□□ 0.72
Cd40lgP27548 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cd40lgP27548 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cd40lgP27548 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.53■□□□□ 0.72
Cd40lgP27548 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Cd40lgP27548 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cd40lgP27548 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Cd40lgP27548 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cd40lgP27548 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cd40lgP27548 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Cd40lgP27548 Gm28731-201ENSMUST00000185564 1569 ntBASIC19.52■□□□□ 0.71
Cd40lgP27548 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Cd40lgP27548 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Cd40lgP27548 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Cd40lgP27548 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Cd40lgP27548 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Cd40lgP27548 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cd40lgP27548 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.51■□□□□ 0.71
Cd40lgP27548 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cd40lgP27548 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cd40lgP27548 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Cd40lgP27548 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd40lgP27548 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd40lgP27548 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cd40lgP27548 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
Cd40lgP27548 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.5■□□□□ 0.71
Cd40lgP27548 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd40lgP27548 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cd40lgP27548 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cd40lgP27548 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Cd40lgP27548 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd40lgP27548 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Cd40lgP27548 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd40lgP27548 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cd40lgP27548 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.5■□□□□ 0.71
Cd40lgP27548 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cd40lgP27548 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cd40lgP27548 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cd40lgP27548 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
Cd40lgP27548 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.49■□□□□ 0.71
Cd40lgP27548 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Cd40lgP27548 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Cd40lgP27548 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cd40lgP27548 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cd40lgP27548 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Cd40lgP27548 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cd40lgP27548 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.48■□□□□ 0.71
Cd40lgP27548 Gm45444-201ENSMUST00000211394 898 ntBASIC19.48■□□□□ 0.71
Cd40lgP27548 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cd40lgP27548 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.48■□□□□ 0.71
Cd40lgP27548 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cd40lgP27548 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cd40lgP27548 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cd40lgP27548 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cd40lgP27548 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cd40lgP27548 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
Cd40lgP27548 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cd40lgP27548 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Cd40lgP27548 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cd40lgP27548 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cd40lgP27548 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms