Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
Scn4aQ9ER60 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
Scn4aQ9ER60 Gm21168-201ENSMUST00000199646 1096 ntBASIC31.11■■■□□ 2.57
Scn4aQ9ER60 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
Scn4aQ9ER60 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Scn4aQ9ER60 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Scn4aQ9ER60 Gm5874-201ENSMUST00000096101 508 ntBASIC31.1■■■□□ 2.57
Scn4aQ9ER60 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC31.09■■■□□ 2.57
Scn4aQ9ER60 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Scn4aQ9ER60 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Scn4aQ9ER60 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
Scn4aQ9ER60 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
Scn4aQ9ER60 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
Scn4aQ9ER60 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Scn4aQ9ER60 Gm7199-201ENSMUST00000118327 1485 ntBASIC31.06■■■□□ 2.56
Scn4aQ9ER60 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Scn4aQ9ER60 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Scn4aQ9ER60 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
Scn4aQ9ER60 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Scn4aQ9ER60 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Scn4aQ9ER60 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC31.04■■■□□ 2.56
Scn4aQ9ER60 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Scn4aQ9ER60 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Scn4aQ9ER60 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Scn4aQ9ER60 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC31.03■■■□□ 2.56
Scn4aQ9ER60 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Scn4aQ9ER60 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Scn4aQ9ER60 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Scn4aQ9ER60 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
Scn4aQ9ER60 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Scn4aQ9ER60 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC31.03■■■□□ 2.56
Scn4aQ9ER60 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC31.03■■■□□ 2.56
Scn4aQ9ER60 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Scn4aQ9ER60 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Scn4aQ9ER60 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Scn4aQ9ER60 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Scn4aQ9ER60 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
Scn4aQ9ER60 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Scn4aQ9ER60 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC31■■■□□ 2.55
Scn4aQ9ER60 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC31■■■□□ 2.55
Scn4aQ9ER60 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC31■■■□□ 2.55
Scn4aQ9ER60 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC31■■■□□ 2.55
Scn4aQ9ER60 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Scn4aQ9ER60 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Scn4aQ9ER60 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Scn4aQ9ER60 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Scn4aQ9ER60 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC30.98■■■□□ 2.55
Scn4aQ9ER60 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
Scn4aQ9ER60 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC30.98■■■□□ 2.55
Scn4aQ9ER60 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
Scn4aQ9ER60 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Scn4aQ9ER60 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Scn4aQ9ER60 CT025689.6-201ENSMUST00000224991 1104 ntBASIC30.96■■■□□ 2.55
Scn4aQ9ER60 Gm11847-201ENSMUST00000125165 1119 ntBASIC30.96■■■□□ 2.55
Scn4aQ9ER60 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC30.96■■■□□ 2.55
Scn4aQ9ER60 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
Scn4aQ9ER60 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Scn4aQ9ER60 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC30.96■■■□□ 2.55
Scn4aQ9ER60 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC30.96■■■□□ 2.55
Scn4aQ9ER60 Nsd1-206ENSMUST00000224918 1001 ntBASIC30.95■■■□□ 2.55
Scn4aQ9ER60 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.54
Scn4aQ9ER60 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC30.94■■■□□ 2.54
Scn4aQ9ER60 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
Scn4aQ9ER60 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Scn4aQ9ER60 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC30.94■■■□□ 2.54
Scn4aQ9ER60 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC30.93■■■□□ 2.54
Scn4aQ9ER60 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Scn4aQ9ER60 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Scn4aQ9ER60 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
Scn4aQ9ER60 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
Scn4aQ9ER60 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Scn4aQ9ER60 Gm8093-201ENSMUST00000128935 1892 ntBASIC30.9■■■□□ 2.54
Scn4aQ9ER60 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Scn4aQ9ER60 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
Scn4aQ9ER60 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
Scn4aQ9ER60 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Scn4aQ9ER60 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC30.89■■■□□ 2.54
Scn4aQ9ER60 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Scn4aQ9ER60 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
Scn4aQ9ER60 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC30.88■■■□□ 2.53
Scn4aQ9ER60 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
Scn4aQ9ER60 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC30.88■■■□□ 2.53
Scn4aQ9ER60 AC164433.2-201ENSMUST00000226346 1701 ntBASIC30.88■■■□□ 2.53
Scn4aQ9ER60 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Scn4aQ9ER60 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Gm37179-201ENSMUST00000194862 823 ntBASIC30.87■■■□□ 2.53
Scn4aQ9ER60 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Gm9207-201ENSMUST00000198773 1115 ntBASIC30.87■■■□□ 2.53
Scn4aQ9ER60 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms