Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
Ddx56Q9D0R4 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
Ddx56Q9D0R4 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Ddx56Q9D0R4 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
Ddx56Q9D0R4 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
Ddx56Q9D0R4 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Ddx56Q9D0R4 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
Ddx56Q9D0R4 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
Ddx56Q9D0R4 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Ddx56Q9D0R4 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Ddx56Q9D0R4 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ddx56Q9D0R4 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddx56Q9D0R4 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddx56Q9D0R4 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ddx56Q9D0R4 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddx56Q9D0R4 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC22.71■■□□□ 1.23
Ddx56Q9D0R4 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC22.71■■□□□ 1.23
Ddx56Q9D0R4 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ddx56Q9D0R4 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ddx56Q9D0R4 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ddx56Q9D0R4 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ddx56Q9D0R4 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ddx56Q9D0R4 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Ddx56Q9D0R4 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
Ddx56Q9D0R4 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Ddx56Q9D0R4 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ddx56Q9D0R4 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ddx56Q9D0R4 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
Ddx56Q9D0R4 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC22.69■■□□□ 1.22
Ddx56Q9D0R4 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Ddx56Q9D0R4 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ddx56Q9D0R4 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddx56Q9D0R4 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddx56Q9D0R4 Gm10420-201ENSMUST00000121713 882 ntBASIC22.68■■□□□ 1.22
Ddx56Q9D0R4 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddx56Q9D0R4 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC22.68■■□□□ 1.22
Ddx56Q9D0R4 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddx56Q9D0R4 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Ddx56Q9D0R4 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx56Q9D0R4 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx56Q9D0R4 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC22.67■■□□□ 1.22
Ddx56Q9D0R4 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
Ddx56Q9D0R4 Gm43592-201ENSMUST00000196922 1165 ntBASIC22.67■■□□□ 1.22
Ddx56Q9D0R4 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx56Q9D0R4 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx56Q9D0R4 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx56Q9D0R4 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx56Q9D0R4 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddx56Q9D0R4 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC22.66■■□□□ 1.22
Ddx56Q9D0R4 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Ddx56Q9D0R4 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddx56Q9D0R4 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Ddx56Q9D0R4 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC22.66■■□□□ 1.22
Ddx56Q9D0R4 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ddx56Q9D0R4 AC153962.1-201ENSMUST00000218530 1948 ntBASIC22.65■■□□□ 1.22
Ddx56Q9D0R4 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC22.65■■□□□ 1.22
Ddx56Q9D0R4 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC22.65■■□□□ 1.22
Ddx56Q9D0R4 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
Ddx56Q9D0R4 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC22.65■■□□□ 1.22
Ddx56Q9D0R4 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Ddx56Q9D0R4 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC22.65■■□□□ 1.22
Ddx56Q9D0R4 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Ddx56Q9D0R4 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ddx56Q9D0R4 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ddx56Q9D0R4 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC22.64■■□□□ 1.21
Ddx56Q9D0R4 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ddx56Q9D0R4 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx56Q9D0R4 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx56Q9D0R4 Cap2-205ENSMUST00000225824 1634 ntBASIC22.63■■□□□ 1.21
Ddx56Q9D0R4 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx56Q9D0R4 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ddx56Q9D0R4 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
Ddx56Q9D0R4 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ddx56Q9D0R4 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ddx56Q9D0R4 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx56Q9D0R4 Gm26766-202ENSMUST00000227544 2347 ntBASIC22.6■■□□□ 1.21
Ddx56Q9D0R4 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
Ddx56Q9D0R4 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Ddx56Q9D0R4 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms