Protein–RNA interactions for Protein: Q8CGV8

Mmp28, Matrix metallopeptidase 28 (epilysin), mousemouse

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp28Q8CGV8 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Mmp28Q8CGV8 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC18.35■□□□□ 0.53
Mmp28Q8CGV8 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Mmp28Q8CGV8 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Mmp28Q8CGV8 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Mmp28Q8CGV8 Gm6821-201ENSMUST00000107540 542 ntBASIC18.35■□□□□ 0.53
Mmp28Q8CGV8 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Mmp28Q8CGV8 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Mmp28Q8CGV8 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Mmp28Q8CGV8 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Mmp28Q8CGV8 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Mmp28Q8CGV8 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Mmp28Q8CGV8 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Mmp28Q8CGV8 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Mmp28Q8CGV8 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
Mmp28Q8CGV8 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Mmp28Q8CGV8 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Mmp28Q8CGV8 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Mmp28Q8CGV8 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.32■□□□□ 0.52
Mmp28Q8CGV8 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.31■□□□□ 0.52
Mmp28Q8CGV8 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Mmp28Q8CGV8 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Mmp28Q8CGV8 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.29■□□□□ 0.52
Mmp28Q8CGV8 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Mmp28Q8CGV8 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Mmp28Q8CGV8 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Mmp28Q8CGV8 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Mmp28Q8CGV8 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Mmp28Q8CGV8 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Mmp28Q8CGV8 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Mmp28Q8CGV8 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
Mmp28Q8CGV8 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.28■□□□□ 0.52
Mmp28Q8CGV8 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.28■□□□□ 0.52
Mmp28Q8CGV8 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Mmp28Q8CGV8 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Mmp28Q8CGV8 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Mmp28Q8CGV8 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Mmp28Q8CGV8 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.27■□□□□ 0.52
Mmp28Q8CGV8 Gm8093-201ENSMUST00000128935 1892 ntBASIC18.27■□□□□ 0.52
Mmp28Q8CGV8 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC18.27■□□□□ 0.52
Mmp28Q8CGV8 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Mmp28Q8CGV8 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC18.27■□□□□ 0.51
Mmp28Q8CGV8 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Mmp28Q8CGV8 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Mmp28Q8CGV8 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Gm8503-201ENSMUST00000118131 455 ntBASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp28Q8CGV8 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp28Q8CGV8 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp28Q8CGV8 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp28Q8CGV8 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC18.25■□□□□ 0.51
Mmp28Q8CGV8 AC153962.1-201ENSMUST00000218530 1948 ntBASIC18.25■□□□□ 0.51
Mmp28Q8CGV8 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp28Q8CGV8 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp28Q8CGV8 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp28Q8CGV8 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms