Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc28bQ8CEG5 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc28bQ8CEG5 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC21.28■■□□□ 1
Ccdc28bQ8CEG5 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC21.28■■□□□ 1
Ccdc28bQ8CEG5 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC21.28■■□□□ 1
Ccdc28bQ8CEG5 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC21.28■■□□□ 1
Ccdc28bQ8CEG5 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc28bQ8CEG5 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.28■■□□□ 1
Ccdc28bQ8CEG5 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc28bQ8CEG5 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc28bQ8CEG5 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Ccdc28bQ8CEG5 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ccdc28bQ8CEG5 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.27■■□□□ 1
Ccdc28bQ8CEG5 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC21.27■■□□□ 1
Ccdc28bQ8CEG5 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ccdc28bQ8CEG5 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc28bQ8CEG5 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Ccdc28bQ8CEG5 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc28bQ8CEG5 AC131739.1-201ENSMUST00000221692 1245 ntBASIC21.26■□□□□ 0.99
Ccdc28bQ8CEG5 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc28bQ8CEG5 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc28bQ8CEG5 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Ccdc28bQ8CEG5 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc28bQ8CEG5 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc28bQ8CEG5 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc28bQ8CEG5 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Ccdc28bQ8CEG5 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Ccdc28bQ8CEG5 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.24■□□□□ 0.99
Ccdc28bQ8CEG5 Gm7199-201ENSMUST00000118327 1485 ntBASIC21.24■□□□□ 0.99
Ccdc28bQ8CEG5 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccdc28bQ8CEG5 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 Gm9812-201ENSMUST00000061934 968 ntBASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Ccdc28bQ8CEG5 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc28bQ8CEG5 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc28bQ8CEG5 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc28bQ8CEG5 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc28bQ8CEG5 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.22■□□□□ 0.99
Ccdc28bQ8CEG5 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc28bQ8CEG5 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc28bQ8CEG5 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc28bQ8CEG5 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Ccdc28bQ8CEG5 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc28bQ8CEG5 Gm4799-201ENSMUST00000095396 657 ntBASIC21.21■□□□□ 0.99
Ccdc28bQ8CEG5 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.21■□□□□ 0.99
Ccdc28bQ8CEG5 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Ccdc28bQ8CEG5 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Ccdc28bQ8CEG5 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc28bQ8CEG5 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC21.21■□□□□ 0.99
Ccdc28bQ8CEG5 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Gm9939-201ENSMUST00000067161 1154 ntBASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Ccdc28bQ8CEG5 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc28bQ8CEG5 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21.19■□□□□ 0.98
Ccdc28bQ8CEG5 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc28bQ8CEG5 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC21.18■□□□□ 0.98
Ccdc28bQ8CEG5 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC21.17■□□□□ 0.98
Ccdc28bQ8CEG5 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28bQ8CEG5 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc28bQ8CEG5 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28bQ8CEG5 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28bQ8CEG5 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc28bQ8CEG5 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Ccdc28bQ8CEG5 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC21.16■□□□□ 0.98
Ccdc28bQ8CEG5 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.16■□□□□ 0.98
Ccdc28bQ8CEG5 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.16■□□□□ 0.98
Ccdc28bQ8CEG5 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc28bQ8CEG5 Gm6821-201ENSMUST00000107540 542 ntBASIC21.15■□□□□ 0.98
Ccdc28bQ8CEG5 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc28bQ8CEG5 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccdc28bQ8CEG5 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.14■□□□□ 0.98
Ccdc28bQ8CEG5 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccdc28bQ8CEG5 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
Ccdc28bQ8CEG5 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.14■□□□□ 0.97
Ccdc28bQ8CEG5 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms