Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC23.66■■□□□ 1.38
CtcfQ61164 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC23.66■■□□□ 1.38
CtcfQ61164 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CtcfQ61164 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CtcfQ61164 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC23.65■■□□□ 1.38
CtcfQ61164 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CtcfQ61164 Gm16437-201ENSMUST00000025669 507 ntBASIC23.65■■□□□ 1.38
CtcfQ61164 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CtcfQ61164 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CtcfQ61164 AC117245.4-201ENSMUST00000217388 1646 ntBASIC23.65■■□□□ 1.38
CtcfQ61164 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CtcfQ61164 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC23.64■■□□□ 1.37
CtcfQ61164 Scarna2-201ENSMUST00000157560 414 ntBASIC23.64■■□□□ 1.37
CtcfQ61164 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC23.63■■□□□ 1.37
CtcfQ61164 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CtcfQ61164 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
CtcfQ61164 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CtcfQ61164 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CtcfQ61164 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CtcfQ61164 Gm13042-201ENSMUST00000119244 1955 ntBASIC23.61■■□□□ 1.37
CtcfQ61164 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
CtcfQ61164 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CtcfQ61164 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC23.6■■□□□ 1.37
CtcfQ61164 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC23.59■■□□□ 1.37
CtcfQ61164 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CtcfQ61164 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CtcfQ61164 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CtcfQ61164 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CtcfQ61164 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CtcfQ61164 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CtcfQ61164 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CtcfQ61164 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC23.59■■□□□ 1.37
CtcfQ61164 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CtcfQ61164 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CtcfQ61164 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CtcfQ61164 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CtcfQ61164 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CtcfQ61164 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CtcfQ61164 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CtcfQ61164 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
CtcfQ61164 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CtcfQ61164 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC23.56■■□□□ 1.36
CtcfQ61164 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CtcfQ61164 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC23.56■■□□□ 1.36
CtcfQ61164 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CtcfQ61164 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CtcfQ61164 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CtcfQ61164 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
CtcfQ61164 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC23.55■■□□□ 1.36
CtcfQ61164 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CtcfQ61164 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
CtcfQ61164 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CtcfQ61164 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CtcfQ61164 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CtcfQ61164 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CtcfQ61164 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CtcfQ61164 Gm12504-201ENSMUST00000120860 2231 ntBASIC23.54■■□□□ 1.36
CtcfQ61164 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
CtcfQ61164 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
CtcfQ61164 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CtcfQ61164 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CtcfQ61164 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CtcfQ61164 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CtcfQ61164 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.53■■□□□ 1.36
CtcfQ61164 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC23.53■■□□□ 1.36
CtcfQ61164 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CtcfQ61164 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC23.53■■□□□ 1.36
CtcfQ61164 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
CtcfQ61164 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
CtcfQ61164 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
CtcfQ61164 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CtcfQ61164 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
CtcfQ61164 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
CtcfQ61164 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC23.52■■□□□ 1.35
CtcfQ61164 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CtcfQ61164 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC23.51■■□□□ 1.35
CtcfQ61164 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CtcfQ61164 Gm9806-201ENSMUST00000051080 552 ntBASIC23.51■■□□□ 1.35
CtcfQ61164 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CtcfQ61164 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC23.51■■□□□ 1.35
CtcfQ61164 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CtcfQ61164 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CtcfQ61164 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CtcfQ61164 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC23.5■■□□□ 1.35
CtcfQ61164 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CtcfQ61164 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC23.5■■□□□ 1.35
CtcfQ61164 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CtcfQ61164 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
CtcfQ61164 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CtcfQ61164 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CtcfQ61164 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC23.49■■□□□ 1.35
CtcfQ61164 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CtcfQ61164 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC23.49■■□□□ 1.35
CtcfQ61164 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CtcfQ61164 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC23.49■■□□□ 1.35
CtcfQ61164 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CtcfQ61164 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CtcfQ61164 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC23.48■■□□□ 1.35
CtcfQ61164 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CtcfQ61164 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms