Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col28a1Q2UY11 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.84■□□□□ 0.93
Col28a1Q2UY11 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.84■□□□□ 0.93
Col28a1Q2UY11 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC20.83■□□□□ 0.93
Col28a1Q2UY11 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col28a1Q2UY11 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Col28a1Q2UY11 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Col28a1Q2UY11 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Col28a1Q2UY11 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col28a1Q2UY11 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col28a1Q2UY11 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC20.82■□□□□ 0.92
Col28a1Q2UY11 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Col28a1Q2UY11 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col28a1Q2UY11 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col28a1Q2UY11 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col28a1Q2UY11 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col28a1Q2UY11 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Col28a1Q2UY11 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.81■□□□□ 0.92
Col28a1Q2UY11 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Col28a1Q2UY11 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col28a1Q2UY11 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col28a1Q2UY11 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Col28a1Q2UY11 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Col28a1Q2UY11 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col28a1Q2UY11 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col28a1Q2UY11 Gm11687-201ENSMUST00000118911 886 ntBASIC20.78■□□□□ 0.92
Col28a1Q2UY11 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col28a1Q2UY11 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col28a1Q2UY11 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col28a1Q2UY11 Gm9806-201ENSMUST00000051080 552 ntBASIC20.78■□□□□ 0.92
Col28a1Q2UY11 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
Col28a1Q2UY11 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.78■□□□□ 0.92
Col28a1Q2UY11 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col28a1Q2UY11 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col28a1Q2UY11 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col28a1Q2UY11 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col28a1Q2UY11 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col28a1Q2UY11 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col28a1Q2UY11 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col28a1Q2UY11 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.76■□□□□ 0.91
Col28a1Q2UY11 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col28a1Q2UY11 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.76■□□□□ 0.91
Col28a1Q2UY11 Gm12366-201ENSMUST00000121722 873 ntBASIC20.76■□□□□ 0.91
Col28a1Q2UY11 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.76■□□□□ 0.91
Col28a1Q2UY11 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col28a1Q2UY11 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.76■□□□□ 0.91
Col28a1Q2UY11 Gm5786-201ENSMUST00000085368 882 ntBASIC20.76■□□□□ 0.91
Col28a1Q2UY11 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.76■□□□□ 0.91
Col28a1Q2UY11 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.75■□□□□ 0.91
Col28a1Q2UY11 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.75■□□□□ 0.91
Col28a1Q2UY11 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col28a1Q2UY11 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC20.75■□□□□ 0.91
Col28a1Q2UY11 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col28a1Q2UY11 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Gm16437-201ENSMUST00000025669 507 ntBASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Gm4799-201ENSMUST00000095396 657 ntBASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.74■□□□□ 0.91
Col28a1Q2UY11 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col28a1Q2UY11 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col28a1Q2UY11 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col28a1Q2UY11 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.73■□□□□ 0.91
Col28a1Q2UY11 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col28a1Q2UY11 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col28a1Q2UY11 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col28a1Q2UY11 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col28a1Q2UY11 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col28a1Q2UY11 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col28a1Q2UY11 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Col28a1Q2UY11 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col28a1Q2UY11 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col28a1Q2UY11 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col28a1Q2UY11 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Col28a1Q2UY11 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.72■□□□□ 0.91
Col28a1Q2UY11 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms