Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC26.41■■□□□ 1.82
Ube4aE9Q735 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ube4aE9Q735 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
Ube4aE9Q735 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ube4aE9Q735 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ube4aE9Q735 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC26.39■■□□□ 1.82
Ube4aE9Q735 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ube4aE9Q735 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Ube4aE9Q735 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ube4aE9Q735 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC26.38■■□□□ 1.81
Ube4aE9Q735 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ube4aE9Q735 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC26.38■■□□□ 1.81
Ube4aE9Q735 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ube4aE9Q735 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Ube4aE9Q735 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ube4aE9Q735 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ube4aE9Q735 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC26.37■■□□□ 1.81
Ube4aE9Q735 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC26.37■■□□□ 1.81
Ube4aE9Q735 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC26.37■■□□□ 1.81
Ube4aE9Q735 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Ube4aE9Q735 Gm40881-201ENSMUST00000223397 166 ntBASIC26.36■■□□□ 1.81
Ube4aE9Q735 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC26.35■■□□□ 1.81
Ube4aE9Q735 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC26.35■■□□□ 1.81
Ube4aE9Q735 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC26.35■■□□□ 1.81
Ube4aE9Q735 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ube4aE9Q735 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ube4aE9Q735 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Ube4aE9Q735 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ube4aE9Q735 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ube4aE9Q735 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Ube4aE9Q735 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ube4aE9Q735 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ube4aE9Q735 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ube4aE9Q735 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ube4aE9Q735 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ube4aE9Q735 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ube4aE9Q735 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ube4aE9Q735 Gm8093-201ENSMUST00000128935 1892 ntBASIC26.31■■□□□ 1.8
Ube4aE9Q735 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC26.31■■□□□ 1.8
Ube4aE9Q735 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ube4aE9Q735 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC26.31■■□□□ 1.8
Ube4aE9Q735 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ube4aE9Q735 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
Ube4aE9Q735 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Ube4aE9Q735 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
Ube4aE9Q735 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ube4aE9Q735 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ube4aE9Q735 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Ube4aE9Q735 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Ube4aE9Q735 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ube4aE9Q735 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Gm10399-202ENSMUST00000202768 748 ntBASIC26.28■■□□□ 1.8
Ube4aE9Q735 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC26.28■■□□□ 1.8
Ube4aE9Q735 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
Ube4aE9Q735 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC26.27■■□□□ 1.8
Ube4aE9Q735 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ube4aE9Q735 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ube4aE9Q735 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ube4aE9Q735 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ube4aE9Q735 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ube4aE9Q735 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC26.25■■□□□ 1.79
Ube4aE9Q735 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ube4aE9Q735 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Gm22238-201ENSMUST00000175222 88 ntBASIC26.24■■□□□ 1.79
Ube4aE9Q735 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC26.24■■□□□ 1.79
Ube4aE9Q735 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ube4aE9Q735 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ube4aE9Q735 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC26.23■■□□□ 1.79
Ube4aE9Q735 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ube4aE9Q735 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ube4aE9Q735 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ube4aE9Q735 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ube4aE9Q735 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ube4aE9Q735 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
Ube4aE9Q735 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
Ube4aE9Q735 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ube4aE9Q735 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ube4aE9Q735 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Ube4aE9Q735 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ube4aE9Q735 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ube4aE9Q735 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC26.2■■□□□ 1.79
Ube4aE9Q735 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC26.2■■□□□ 1.79
Ube4aE9Q735 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms