Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Scn4aQ9ER60 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Scn4aQ9ER60 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Scn4aQ9ER60 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Scn4aQ9ER60 Gm28536-201ENSMUST00000190971 1317 ntBASIC31.35■■■□□ 2.61
Scn4aQ9ER60 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Scn4aQ9ER60 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Scn4aQ9ER60 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC31.33■■■□□ 2.61
Scn4aQ9ER60 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC31.33■■■□□ 2.61
Scn4aQ9ER60 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Scn4aQ9ER60 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC31.33■■■□□ 2.61
Scn4aQ9ER60 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Scn4aQ9ER60 Gm28731-201ENSMUST00000185564 1569 ntBASIC31.32■■■□□ 2.6
Scn4aQ9ER60 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
Scn4aQ9ER60 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Scn4aQ9ER60 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Scn4aQ9ER60 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Scn4aQ9ER60 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC31.31■■■□□ 2.6
Scn4aQ9ER60 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Scn4aQ9ER60 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
Scn4aQ9ER60 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Scn4aQ9ER60 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC31.3■■■□□ 2.6
Scn4aQ9ER60 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
Scn4aQ9ER60 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Scn4aQ9ER60 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC31.3■■■□□ 2.6
Scn4aQ9ER60 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
Scn4aQ9ER60 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Scn4aQ9ER60 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC31.29■■■□□ 2.6
Scn4aQ9ER60 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Scn4aQ9ER60 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Scn4aQ9ER60 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Scn4aQ9ER60 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Scn4aQ9ER60 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Scn4aQ9ER60 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC31.28■■■□□ 2.6
Scn4aQ9ER60 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Scn4aQ9ER60 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC31.27■■■□□ 2.6
Scn4aQ9ER60 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
Scn4aQ9ER60 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
Scn4aQ9ER60 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC31.26■■■□□ 2.6
Scn4aQ9ER60 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC31.26■■■□□ 2.6
Scn4aQ9ER60 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Scn4aQ9ER60 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Scn4aQ9ER60 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Scn4aQ9ER60 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Scn4aQ9ER60 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC31.24■■■□□ 2.59
Scn4aQ9ER60 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Scn4aQ9ER60 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC31.24■■■□□ 2.59
Scn4aQ9ER60 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC31.24■■■□□ 2.59
Scn4aQ9ER60 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Scn4aQ9ER60 Gm43017-201ENSMUST00000198296 752 ntBASIC31.24■■■□□ 2.59
Scn4aQ9ER60 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC31.23■■■□□ 2.59
Scn4aQ9ER60 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC31.23■■■□□ 2.59
Scn4aQ9ER60 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC31.23■■■□□ 2.59
Scn4aQ9ER60 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Scn4aQ9ER60 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC31.23■■■□□ 2.59
Scn4aQ9ER60 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
Scn4aQ9ER60 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC31.22■■■□□ 2.59
Scn4aQ9ER60 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Scn4aQ9ER60 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Scn4aQ9ER60 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
Scn4aQ9ER60 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC31.22■■■□□ 2.59
Scn4aQ9ER60 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Scn4aQ9ER60 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Scn4aQ9ER60 Gm10399-202ENSMUST00000202768 748 ntBASIC31.21■■■□□ 2.59
Scn4aQ9ER60 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Scn4aQ9ER60 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Scn4aQ9ER60 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC31.21■■■□□ 2.59
Scn4aQ9ER60 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Scn4aQ9ER60 Gm6139-201ENSMUST00000079261 882 ntBASIC31.21■■■□□ 2.59
Scn4aQ9ER60 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Scn4aQ9ER60 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Scn4aQ9ER60 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Scn4aQ9ER60 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Scn4aQ9ER60 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Scn4aQ9ER60 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
Scn4aQ9ER60 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Scn4aQ9ER60 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC31.17■■■□□ 2.58
Scn4aQ9ER60 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC31.17■■■□□ 2.58
Scn4aQ9ER60 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
Scn4aQ9ER60 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Scn4aQ9ER60 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Scn4aQ9ER60 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Scn4aQ9ER60 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Scn4aQ9ER60 Gm7291-201ENSMUST00000199147 382 ntBASIC31.15■■■□□ 2.58
Scn4aQ9ER60 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Scn4aQ9ER60 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Scn4aQ9ER60 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Scn4aQ9ER60 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Scn4aQ9ER60 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Scn4aQ9ER60 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Scn4aQ9ER60 Gm26571-201ENSMUST00000181399 666 ntBASIC31.14■■■□□ 2.58
Scn4aQ9ER60 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC31.14■■■□□ 2.58
Scn4aQ9ER60 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.58
Scn4aQ9ER60 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
Scn4aQ9ER60 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC31.13■■■□□ 2.57
Scn4aQ9ER60 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Scn4aQ9ER60 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC31.12■■■□□ 2.57
Scn4aQ9ER60 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC31.12■■■□□ 2.57
Scn4aQ9ER60 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
Scn4aQ9ER60 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC31.12■■■□□ 2.57
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms