Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cdc40Q9DC48 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Cdc40Q9DC48 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Cdc40Q9DC48 Gm5812-201ENSMUST00000061073 957 ntBASIC20.06■□□□□ 0.8
Cdc40Q9DC48 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cdc40Q9DC48 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cdc40Q9DC48 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdc40Q9DC48 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.04■□□□□ 0.8
Cdc40Q9DC48 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Cdc40Q9DC48 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdc40Q9DC48 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
Cdc40Q9DC48 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdc40Q9DC48 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdc40Q9DC48 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdc40Q9DC48 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdc40Q9DC48 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Cdc40Q9DC48 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
Cdc40Q9DC48 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cdc40Q9DC48 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Cdc40Q9DC48 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cdc40Q9DC48 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Cdc40Q9DC48 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cdc40Q9DC48 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cdc40Q9DC48 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Cdc40Q9DC48 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Cdc40Q9DC48 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.02■□□□□ 0.8
Cdc40Q9DC48 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cdc40Q9DC48 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Cdc40Q9DC48 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC20.02■□□□□ 0.8
Cdc40Q9DC48 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.02■□□□□ 0.8
Cdc40Q9DC48 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.01■□□□□ 0.79
Cdc40Q9DC48 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cdc40Q9DC48 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdc40Q9DC48 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cdc40Q9DC48 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdc40Q9DC48 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.01■□□□□ 0.79
Cdc40Q9DC48 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Cdc40Q9DC48 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Cdc40Q9DC48 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdc40Q9DC48 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.01■□□□□ 0.79
Cdc40Q9DC48 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cdc40Q9DC48 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Cdc40Q9DC48 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cdc40Q9DC48 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdc40Q9DC48 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdc40Q9DC48 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdc40Q9DC48 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cdc40Q9DC48 Gm28731-201ENSMUST00000185564 1569 ntBASIC20■□□□□ 0.79
Cdc40Q9DC48 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cdc40Q9DC48 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cdc40Q9DC48 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Cdc40Q9DC48 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.99■□□□□ 0.79
Cdc40Q9DC48 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Cdc40Q9DC48 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Cdc40Q9DC48 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdc40Q9DC48 Gm15546-201ENSMUST00000122095 826 ntBASIC19.98■□□□□ 0.79
Cdc40Q9DC48 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdc40Q9DC48 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdc40Q9DC48 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Cdc40Q9DC48 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Cdc40Q9DC48 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdc40Q9DC48 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdc40Q9DC48 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Cdc40Q9DC48 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Cdc40Q9DC48 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.97■□□□□ 0.79
Cdc40Q9DC48 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdc40Q9DC48 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Cdc40Q9DC48 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdc40Q9DC48 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdc40Q9DC48 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdc40Q9DC48 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdc40Q9DC48 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdc40Q9DC48 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Cdc40Q9DC48 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdc40Q9DC48 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdc40Q9DC48 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.95■□□□□ 0.78
Cdc40Q9DC48 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cdc40Q9DC48 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdc40Q9DC48 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.95■□□□□ 0.78
Cdc40Q9DC48 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.95■□□□□ 0.78
Cdc40Q9DC48 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdc40Q9DC48 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cdc40Q9DC48 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.95■□□□□ 0.78
Cdc40Q9DC48 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdc40Q9DC48 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdc40Q9DC48 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Cdc40Q9DC48 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdc40Q9DC48 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Cdc40Q9DC48 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.94■□□□□ 0.78
Cdc40Q9DC48 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdc40Q9DC48 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdc40Q9DC48 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdc40Q9DC48 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Cdc40Q9DC48 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.93■□□□□ 0.78
Cdc40Q9DC48 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Cdc40Q9DC48 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdc40Q9DC48 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdc40Q9DC48 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdc40Q9DC48 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cdc40Q9DC48 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.92■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms