Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Usp47Q8BY87 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
Usp47Q8BY87 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC31.25■■■□□ 2.59
Usp47Q8BY87 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Usp47Q8BY87 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Usp47Q8BY87 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Usp47Q8BY87 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Usp47Q8BY87 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Usp47Q8BY87 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC31.24■■■□□ 2.59
Usp47Q8BY87 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Usp47Q8BY87 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
Usp47Q8BY87 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC31.24■■■□□ 2.59
Usp47Q8BY87 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC31.22■■■□□ 2.59
Usp47Q8BY87 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Usp47Q8BY87 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
Usp47Q8BY87 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC31.21■■■□□ 2.59
Usp47Q8BY87 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
Usp47Q8BY87 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Usp47Q8BY87 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Usp47Q8BY87 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC31.2■■■□□ 2.59
Usp47Q8BY87 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Usp47Q8BY87 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.58
Usp47Q8BY87 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Usp47Q8BY87 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
Usp47Q8BY87 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
Usp47Q8BY87 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Usp47Q8BY87 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Usp47Q8BY87 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Usp47Q8BY87 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC31.18■■■□□ 2.58
Usp47Q8BY87 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Usp47Q8BY87 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Usp47Q8BY87 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
Usp47Q8BY87 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Usp47Q8BY87 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Usp47Q8BY87 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC31.17■■■□□ 2.58
Usp47Q8BY87 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
Usp47Q8BY87 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC31.16■■■□□ 2.58
Usp47Q8BY87 Gm22567-201ENSMUST00000175542 342 ntBASIC31.16■■■□□ 2.58
Usp47Q8BY87 Gm5522-201ENSMUST00000189483 1242 ntBASIC31.16■■■□□ 2.58
Usp47Q8BY87 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Usp47Q8BY87 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
Usp47Q8BY87 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Usp47Q8BY87 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Usp47Q8BY87 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC31.15■■■□□ 2.58
Usp47Q8BY87 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC31.15■■■□□ 2.58
Usp47Q8BY87 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Usp47Q8BY87 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Usp47Q8BY87 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Usp47Q8BY87 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Usp47Q8BY87 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Usp47Q8BY87 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Usp47Q8BY87 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Usp47Q8BY87 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Usp47Q8BY87 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Usp47Q8BY87 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Usp47Q8BY87 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC31.11■■■□□ 2.57
Usp47Q8BY87 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
Usp47Q8BY87 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
Usp47Q8BY87 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Usp47Q8BY87 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
Usp47Q8BY87 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Usp47Q8BY87 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
Usp47Q8BY87 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
Usp47Q8BY87 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
Usp47Q8BY87 Gm15546-201ENSMUST00000122095 826 ntBASIC31.07■■■□□ 2.56
Usp47Q8BY87 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp47Q8BY87 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp47Q8BY87 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Usp47Q8BY87 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp47Q8BY87 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp47Q8BY87 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC31.07■■■□□ 2.56
Usp47Q8BY87 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Usp47Q8BY87 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Usp47Q8BY87 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC31.06■■■□□ 2.56
Usp47Q8BY87 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
Usp47Q8BY87 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
Usp47Q8BY87 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Usp47Q8BY87 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Usp47Q8BY87 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
Usp47Q8BY87 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Usp47Q8BY87 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Usp47Q8BY87 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
Usp47Q8BY87 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Usp47Q8BY87 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Usp47Q8BY87 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC31.04■■■□□ 2.56
Usp47Q8BY87 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Usp47Q8BY87 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Usp47Q8BY87 H3f3aos-201ENSMUST00000097448 2905 ntBASIC31.03■■■□□ 2.56
Usp47Q8BY87 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC31.03■■■□□ 2.56
Usp47Q8BY87 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Usp47Q8BY87 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Usp47Q8BY87 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
Usp47Q8BY87 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
Usp47Q8BY87 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
Usp47Q8BY87 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC31.01■■■□□ 2.55
Usp47Q8BY87 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC31■■■□□ 2.55
Usp47Q8BY87 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Usp47Q8BY87 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC31■■■□□ 2.55
Usp47Q8BY87 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC30.99■■■□□ 2.55
Usp47Q8BY87 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC30.99■■■□□ 2.55
Retrieved 100 of 76,532 protein–RNA pairs in 94.2 ms