Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC30.35■■■□□ 2.45
Usp40Q8BWR4 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Usp40Q8BWR4 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Usp40Q8BWR4 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Usp40Q8BWR4 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Usp40Q8BWR4 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Usp40Q8BWR4 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC30.34■■■□□ 2.45
Usp40Q8BWR4 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Usp40Q8BWR4 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC30.34■■■□□ 2.45
Usp40Q8BWR4 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC30.34■■■□□ 2.45
Usp40Q8BWR4 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Usp40Q8BWR4 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC30.33■■■□□ 2.45
Usp40Q8BWR4 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Usp40Q8BWR4 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Usp40Q8BWR4 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Usp40Q8BWR4 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Usp40Q8BWR4 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC30.33■■■□□ 2.45
Usp40Q8BWR4 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Usp40Q8BWR4 Nsd1-206ENSMUST00000224918 1001 ntBASIC30.32■■■□□ 2.44
Usp40Q8BWR4 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Usp40Q8BWR4 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Usp40Q8BWR4 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Usp40Q8BWR4 Gm28731-201ENSMUST00000185564 1569 ntBASIC30.3■■■□□ 2.44
Usp40Q8BWR4 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Usp40Q8BWR4 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC30.3■■■□□ 2.44
Usp40Q8BWR4 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Usp40Q8BWR4 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Usp40Q8BWR4 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC30.29■■■□□ 2.44
Usp40Q8BWR4 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Usp40Q8BWR4 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Usp40Q8BWR4 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC30.29■■■□□ 2.44
Usp40Q8BWR4 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
Usp40Q8BWR4 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
Usp40Q8BWR4 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Usp40Q8BWR4 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
Usp40Q8BWR4 Etf1-202ENSMUST00000180351 108 ntBASIC30.28■■■□□ 2.44
Usp40Q8BWR4 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Usp40Q8BWR4 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Usp40Q8BWR4 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Usp40Q8BWR4 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC30.27■■■□□ 2.44
Usp40Q8BWR4 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC30.27■■■□□ 2.44
Usp40Q8BWR4 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC30.27■■■□□ 2.44
Usp40Q8BWR4 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Usp40Q8BWR4 Gm28536-201ENSMUST00000190971 1317 ntBASIC30.26■■■□□ 2.44
Usp40Q8BWR4 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Usp40Q8BWR4 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Usp40Q8BWR4 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Usp40Q8BWR4 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Usp40Q8BWR4 Gm5131-201ENSMUST00000212776 1238 ntBASIC30.25■■■□□ 2.43
Usp40Q8BWR4 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Usp40Q8BWR4 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Usp40Q8BWR4 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Usp40Q8BWR4 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Usp40Q8BWR4 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC30.23■■■□□ 2.43
Usp40Q8BWR4 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC30.23■■■□□ 2.43
Usp40Q8BWR4 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Usp40Q8BWR4 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Usp40Q8BWR4 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC30.22■■■□□ 2.43
Usp40Q8BWR4 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Usp40Q8BWR4 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Usp40Q8BWR4 Gm6934-201ENSMUST00000194780 1905 ntBASIC30.22■■■□□ 2.43
Usp40Q8BWR4 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC30.21■■■□□ 2.43
Usp40Q8BWR4 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC30.2■■■□□ 2.43
Usp40Q8BWR4 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC30.2■■■□□ 2.43
Usp40Q8BWR4 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Usp40Q8BWR4 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Usp40Q8BWR4 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC30.19■■■□□ 2.42
Usp40Q8BWR4 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Usp40Q8BWR4 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC30.18■■■□□ 2.42
Usp40Q8BWR4 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC30.18■■■□□ 2.42
Usp40Q8BWR4 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Usp40Q8BWR4 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Usp40Q8BWR4 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Usp40Q8BWR4 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
Usp40Q8BWR4 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC30.16■■■□□ 2.42
Usp40Q8BWR4 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC30.16■■■□□ 2.42
Usp40Q8BWR4 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
Usp40Q8BWR4 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Usp40Q8BWR4 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
Usp40Q8BWR4 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Usp40Q8BWR4 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
Usp40Q8BWR4 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC30.14■■■□□ 2.42
Usp40Q8BWR4 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Usp40Q8BWR4 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Usp40Q8BWR4 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Usp40Q8BWR4 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Usp40Q8BWR4 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
Usp40Q8BWR4 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
Usp40Q8BWR4 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Usp40Q8BWR4 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
Usp40Q8BWR4 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Usp40Q8BWR4 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC30.12■■■□□ 2.41
Usp40Q8BWR4 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Usp40Q8BWR4 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Usp40Q8BWR4 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Usp40Q8BWR4 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Usp40Q8BWR4 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
Usp40Q8BWR4 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Usp40Q8BWR4 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Usp40Q8BWR4 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms