Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf4Q8BQZ5 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf4Q8BQZ5 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC21.01■□□□□ 0.95
Cpsf4Q8BQZ5 Gm7332-201ENSMUST00000118351 454 ntBASIC21.01■□□□□ 0.95
Cpsf4Q8BQZ5 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Cpsf4Q8BQZ5 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf4Q8BQZ5 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf4Q8BQZ5 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cpsf4Q8BQZ5 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Cpsf4Q8BQZ5 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21■□□□□ 0.95
Cpsf4Q8BQZ5 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cpsf4Q8BQZ5 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21■□□□□ 0.95
Cpsf4Q8BQZ5 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf4Q8BQZ5 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf4Q8BQZ5 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cpsf4Q8BQZ5 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf4Q8BQZ5 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Cpsf4Q8BQZ5 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Cpsf4Q8BQZ5 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
Cpsf4Q8BQZ5 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
Cpsf4Q8BQZ5 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf4Q8BQZ5 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cpsf4Q8BQZ5 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Cpsf4Q8BQZ5 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cpsf4Q8BQZ5 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf4Q8BQZ5 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf4Q8BQZ5 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf4Q8BQZ5 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf4Q8BQZ5 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf4Q8BQZ5 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Cpsf4Q8BQZ5 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Cpsf4Q8BQZ5 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Gm44428-201ENSMUST00000204474 874 ntBASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.96■□□□□ 0.95
Cpsf4Q8BQZ5 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cpsf4Q8BQZ5 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Cpsf4Q8BQZ5 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cpsf4Q8BQZ5 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cpsf4Q8BQZ5 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cpsf4Q8BQZ5 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf4Q8BQZ5 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf4Q8BQZ5 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf4Q8BQZ5 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf4Q8BQZ5 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf4Q8BQZ5 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf4Q8BQZ5 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf4Q8BQZ5 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cpsf4Q8BQZ5 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cpsf4Q8BQZ5 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.93■□□□□ 0.94
Cpsf4Q8BQZ5 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cpsf4Q8BQZ5 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cpsf4Q8BQZ5 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Cpsf4Q8BQZ5 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cpsf4Q8BQZ5 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Cpsf4Q8BQZ5 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Cpsf4Q8BQZ5 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.92■□□□□ 0.94
Cpsf4Q8BQZ5 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Cpsf4Q8BQZ5 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cpsf4Q8BQZ5 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf4Q8BQZ5 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Cpsf4Q8BQZ5 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf4Q8BQZ5 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf4Q8BQZ5 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf4Q8BQZ5 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
Cpsf4Q8BQZ5 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cpsf4Q8BQZ5 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cpsf4Q8BQZ5 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.89■□□□□ 0.94
Cpsf4Q8BQZ5 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Cpsf4Q8BQZ5 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cpsf4Q8BQZ5 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.89■□□□□ 0.93
Cpsf4Q8BQZ5 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cpsf4Q8BQZ5 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cpsf4Q8BQZ5 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Cpsf4Q8BQZ5 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Cpsf4Q8BQZ5 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Cpsf4Q8BQZ5 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.88■□□□□ 0.93
Cpsf4Q8BQZ5 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf4Q8BQZ5 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf4Q8BQZ5 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cpsf4Q8BQZ5 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cpsf4Q8BQZ5 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cpsf4Q8BQZ5 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms