Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Gm5921-201ENSMUST00000075898 882 ntBASIC24.45■■□□□ 1.5
Pcdha4O88689 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
Pcdha4O88689 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC24.45■■□□□ 1.5
Pcdha4O88689 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Pcdha4O88689 H3f3aos-201ENSMUST00000097448 2905 ntBASIC24.44■■□□□ 1.5
Pcdha4O88689 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Pcdha4O88689 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Pcdha4O88689 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Pcdha4O88689 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC24.43■■□□□ 1.5
Pcdha4O88689 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Pcdha4O88689 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Pcdha4O88689 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Pcdha4O88689 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Pcdha4O88689 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC24.42■■□□□ 1.5
Pcdha4O88689 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Pcdha4O88689 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Pcdha4O88689 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Pcdha4O88689 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Pcdha4O88689 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Pcdha4O88689 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Pcdha4O88689 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
Pcdha4O88689 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Pcdha4O88689 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC24.4■■□□□ 1.5
Pcdha4O88689 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Pcdha4O88689 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Pcdha4O88689 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Pcdha4O88689 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Pcdha4O88689 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC24.39■■□□□ 1.49
Pcdha4O88689 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Pcdha4O88689 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC24.38■■□□□ 1.49
Pcdha4O88689 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC24.38■■□□□ 1.49
Pcdha4O88689 Nsd1-203ENSMUST00000224156 1149 ntBASIC24.38■■□□□ 1.49
Pcdha4O88689 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Pcdha4O88689 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Pcdha4O88689 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Pcdha4O88689 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
Pcdha4O88689 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Pcdha4O88689 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC24.37■■□□□ 1.49
Pcdha4O88689 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Pcdha4O88689 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC24.37■■□□□ 1.49
Pcdha4O88689 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Pcdha4O88689 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Pcdha4O88689 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdha4O88689 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC24.36■■□□□ 1.49
Pcdha4O88689 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdha4O88689 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
Pcdha4O88689 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdha4O88689 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdha4O88689 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdha4O88689 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Pcdha4O88689 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Pcdha4O88689 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Pcdha4O88689 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Pcdha4O88689 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Pcdha4O88689 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Pcdha4O88689 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Pcdha4O88689 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Pcdha4O88689 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Pcdha4O88689 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Pcdha4O88689 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Pcdha4O88689 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Pcdha4O88689 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Pcdha4O88689 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC24.33■■□□□ 1.49
Pcdha4O88689 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC24.33■■□□□ 1.49
Pcdha4O88689 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC24.33■■□□□ 1.49
Pcdha4O88689 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC24.33■■□□□ 1.49
Pcdha4O88689 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Pcdha4O88689 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Pcdha4O88689 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Pcdha4O88689 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Pcdha4O88689 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Pcdha4O88689 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Pcdha4O88689 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Pcdha4O88689 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Pcdha4O88689 Gm45444-201ENSMUST00000211394 898 ntBASIC24.32■■□□□ 1.48
Pcdha4O88689 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Pcdha4O88689 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Pcdha4O88689 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Pcdha4O88689 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Pcdha4O88689 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
Pcdha4O88689 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
Pcdha4O88689 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Pcdha4O88689 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Pcdha4O88689 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Pcdha4O88689 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
Pcdha4O88689 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC24.3■■□□□ 1.48
Pcdha4O88689 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC24.3■■□□□ 1.48
Pcdha4O88689 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Pcdha4O88689 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC24.3■■□□□ 1.48
Pcdha4O88689 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Pcdha4O88689 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Pcdha4O88689 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
Pcdha4O88689 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Pcdha4O88689 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
Pcdha4O88689 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
Pcdha4O88689 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC24.28■■□□□ 1.48
Pcdha4O88689 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
Pcdha4O88689 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
Pcdha4O88689 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Pcdha4O88689 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms