Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav16d-dv11A0A075B617 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav16d-dv11A0A075B617 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Trav16d-dv11A0A075B617 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trav16d-dv11A0A075B617 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC15.96■□□□□ 0.15
Trav16d-dv11A0A075B617 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trav16d-dv11A0A075B617 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav16d-dv11A0A075B617 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav16d-dv11A0A075B617 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC15.95■□□□□ 0.14
Trav16d-dv11A0A075B617 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC15.95■□□□□ 0.14
Trav16d-dv11A0A075B617 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav16d-dv11A0A075B617 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav16d-dv11A0A075B617 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav16d-dv11A0A075B617 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav16d-dv11A0A075B617 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav16d-dv11A0A075B617 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Gm43006-201ENSMUST00000197702 1602 ntBASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Zfp131-205ENSMUST00000223812 663 ntBASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Gm9910-201ENSMUST00000195385 1550 ntBASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav16d-dv11A0A075B617 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav16d-dv11A0A075B617 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav16d-dv11A0A075B617 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Trav16d-dv11A0A075B617 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trav16d-dv11A0A075B617 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 AC153524.1-201ENSMUST00000220436 1935 ntBASIC15.92■□□□□ 0.14
Trav16d-dv11A0A075B617 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC15.91■□□□□ 0.14
Trav16d-dv11A0A075B617 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav16d-dv11A0A075B617 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav16d-dv11A0A075B617 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC15.91■□□□□ 0.14
Trav16d-dv11A0A075B617 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav16d-dv11A0A075B617 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav16d-dv11A0A075B617 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav16d-dv11A0A075B617 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
Trav16d-dv11A0A075B617 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav16d-dv11A0A075B617 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav16d-dv11A0A075B617 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trav16d-dv11A0A075B617 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC15.9■□□□□ 0.14
Trav16d-dv11A0A075B617 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC15.9■□□□□ 0.14
Trav16d-dv11A0A075B617 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trav16d-dv11A0A075B617 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trav16d-dv11A0A075B617 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trav16d-dv11A0A075B617 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Trav16d-dv11A0A075B617 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trav16d-dv11A0A075B617 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 AC153962.1-201ENSMUST00000218530 1948 ntBASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 Gm9397-201ENSMUST00000200125 605 ntBASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav16d-dv11A0A075B617 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
Trav16d-dv11A0A075B617 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trav16d-dv11A0A075B617 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trav16d-dv11A0A075B617 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trav16d-dv11A0A075B617 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trav16d-dv11A0A075B617 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC15.87■□□□□ 0.13
Trav16d-dv11A0A075B617 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trav16d-dv11A0A075B617 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trav16d-dv11A0A075B617 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav16d-dv11A0A075B617 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav16d-dv11A0A075B617 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav16d-dv11A0A075B617 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav16d-dv11A0A075B617 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Trav16d-dv11A0A075B617 Gm12504-201ENSMUST00000120860 2231 ntBASIC15.86■□□□□ 0.13
Trav16d-dv11A0A075B617 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav16d-dv11A0A075B617 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav16d-dv11A0A075B617 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav16d-dv11A0A075B617 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav16d-dv11A0A075B617 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav16d-dv11A0A075B617 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav16d-dv11A0A075B617 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav16d-dv11A0A075B617 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav16d-dv11A0A075B617 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trav16d-dv11A0A075B617 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trav16d-dv11A0A075B617 Gm28731-201ENSMUST00000185564 1569 ntBASIC15.84■□□□□ 0.13
Trav16d-dv11A0A075B617 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trav16d-dv11A0A075B617 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC15.84■□□□□ 0.13
Trav16d-dv11A0A075B617 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trav16d-dv11A0A075B617 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Trav16d-dv11A0A075B617 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC15.83■□□□□ 0.12
Trav16d-dv11A0A075B617 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trav16d-dv11A0A075B617 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms