Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Cdc40Q9DC48 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Cdc40Q9DC48 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cdc40Q9DC48 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.22■□□□□ 0.83
Cdc40Q9DC48 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cdc40Q9DC48 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cdc40Q9DC48 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.22■□□□□ 0.83
Cdc40Q9DC48 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.22■□□□□ 0.83
Cdc40Q9DC48 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdc40Q9DC48 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdc40Q9DC48 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdc40Q9DC48 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cdc40Q9DC48 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdc40Q9DC48 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
Cdc40Q9DC48 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdc40Q9DC48 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Cdc40Q9DC48 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cdc40Q9DC48 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cdc40Q9DC48 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.19■□□□□ 0.82
Cdc40Q9DC48 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
Cdc40Q9DC48 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
Cdc40Q9DC48 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.18■□□□□ 0.82
Cdc40Q9DC48 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cdc40Q9DC48 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.18■□□□□ 0.82
Cdc40Q9DC48 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Cdc40Q9DC48 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Cdc40Q9DC48 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.18■□□□□ 0.82
Cdc40Q9DC48 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cdc40Q9DC48 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cdc40Q9DC48 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cdc40Q9DC48 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cdc40Q9DC48 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdc40Q9DC48 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdc40Q9DC48 Gm5921-201ENSMUST00000075898 882 ntBASIC20.16■□□□□ 0.82
Cdc40Q9DC48 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdc40Q9DC48 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdc40Q9DC48 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdc40Q9DC48 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Cdc40Q9DC48 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cdc40Q9DC48 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.15■□□□□ 0.82
Cdc40Q9DC48 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cdc40Q9DC48 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cdc40Q9DC48 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cdc40Q9DC48 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Cdc40Q9DC48 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Cdc40Q9DC48 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Cdc40Q9DC48 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cdc40Q9DC48 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdc40Q9DC48 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdc40Q9DC48 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdc40Q9DC48 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdc40Q9DC48 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdc40Q9DC48 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdc40Q9DC48 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
Cdc40Q9DC48 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdc40Q9DC48 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Cdc40Q9DC48 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cdc40Q9DC48 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Cdc40Q9DC48 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.12■□□□□ 0.81
Cdc40Q9DC48 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdc40Q9DC48 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdc40Q9DC48 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.12■□□□□ 0.81
Cdc40Q9DC48 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.11■□□□□ 0.81
Cdc40Q9DC48 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdc40Q9DC48 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Cdc40Q9DC48 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdc40Q9DC48 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdc40Q9DC48 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.09■□□□□ 0.81
Cdc40Q9DC48 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cdc40Q9DC48 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Cdc40Q9DC48 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cdc40Q9DC48 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Cdc40Q9DC48 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Cdc40Q9DC48 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Cdc40Q9DC48 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Cdc40Q9DC48 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.07■□□□□ 0.8
Cdc40Q9DC48 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Cdc40Q9DC48 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdc40Q9DC48 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdc40Q9DC48 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms