Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim40Q3UWA4 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim40Q3UWA4 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.52■□□□□ 0.88
Trim40Q3UWA4 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Trim40Q3UWA4 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trim40Q3UWA4 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trim40Q3UWA4 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Trim40Q3UWA4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trim40Q3UWA4 Nkain2-201ENSMUST00000092602 558 ntBASIC20.51■□□□□ 0.87
Trim40Q3UWA4 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
Trim40Q3UWA4 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim40Q3UWA4 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim40Q3UWA4 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.5■□□□□ 0.87
Trim40Q3UWA4 AC153962.1-201ENSMUST00000218530 1948 ntBASIC20.5■□□□□ 0.87
Trim40Q3UWA4 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trim40Q3UWA4 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Trim40Q3UWA4 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim40Q3UWA4 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim40Q3UWA4 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trim40Q3UWA4 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Trim40Q3UWA4 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim40Q3UWA4 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim40Q3UWA4 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim40Q3UWA4 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim40Q3UWA4 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trim40Q3UWA4 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim40Q3UWA4 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trim40Q3UWA4 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim40Q3UWA4 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim40Q3UWA4 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trim40Q3UWA4 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Trim40Q3UWA4 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Trim40Q3UWA4 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trim40Q3UWA4 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Trim40Q3UWA4 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim40Q3UWA4 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim40Q3UWA4 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trim40Q3UWA4 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Trim40Q3UWA4 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Trim40Q3UWA4 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.46■□□□□ 0.87
Trim40Q3UWA4 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim40Q3UWA4 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim40Q3UWA4 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.45■□□□□ 0.86
Trim40Q3UWA4 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim40Q3UWA4 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim40Q3UWA4 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Trim40Q3UWA4 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Gm37136-201ENSMUST00000194368 194 ntBASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim40Q3UWA4 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Trim40Q3UWA4 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim40Q3UWA4 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim40Q3UWA4 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim40Q3UWA4 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Trim40Q3UWA4 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.42■□□□□ 0.86
Trim40Q3UWA4 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim40Q3UWA4 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim40Q3UWA4 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.4■□□□□ 0.86
Trim40Q3UWA4 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim40Q3UWA4 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC20.4■□□□□ 0.86
Trim40Q3UWA4 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Trim40Q3UWA4 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Trim40Q3UWA4 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Trim40Q3UWA4 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.39■□□□□ 0.86
Trim40Q3UWA4 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim40Q3UWA4 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim40Q3UWA4 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC20.39■□□□□ 0.85
Trim40Q3UWA4 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim40Q3UWA4 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.39■□□□□ 0.85
Trim40Q3UWA4 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim40Q3UWA4 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim40Q3UWA4 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
Trim40Q3UWA4 Notumos-201ENSMUST00000151998 2659 ntBASIC20.38■□□□□ 0.85
Trim40Q3UWA4 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Trim40Q3UWA4 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim40Q3UWA4 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim40Q3UWA4 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim40Q3UWA4 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim40Q3UWA4 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.38■□□□□ 0.85
Trim40Q3UWA4 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.38■□□□□ 0.85
Trim40Q3UWA4 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim40Q3UWA4 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 121.8 ms