Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col28a1Q2UY11 Gm6311-201ENSMUST00000073790 878 ntBASIC21.17■□□□□ 0.98
Col28a1Q2UY11 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col28a1Q2UY11 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col28a1Q2UY11 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col28a1Q2UY11 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col28a1Q2UY11 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col28a1Q2UY11 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.16■□□□□ 0.98
Col28a1Q2UY11 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Col28a1Q2UY11 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col28a1Q2UY11 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col28a1Q2UY11 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col28a1Q2UY11 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col28a1Q2UY11 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col28a1Q2UY11 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.15■□□□□ 0.98
Col28a1Q2UY11 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col28a1Q2UY11 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col28a1Q2UY11 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col28a1Q2UY11 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col28a1Q2UY11 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col28a1Q2UY11 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col28a1Q2UY11 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col28a1Q2UY11 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col28a1Q2UY11 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Col28a1Q2UY11 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col28a1Q2UY11 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col28a1Q2UY11 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col28a1Q2UY11 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Col28a1Q2UY11 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.12■□□□□ 0.97
Col28a1Q2UY11 AC167019.3-201ENSMUST00000228225 1266 ntBASIC21.12■□□□□ 0.97
Col28a1Q2UY11 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col28a1Q2UY11 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col28a1Q2UY11 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col28a1Q2UY11 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col28a1Q2UY11 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col28a1Q2UY11 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col28a1Q2UY11 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col28a1Q2UY11 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col28a1Q2UY11 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Col28a1Q2UY11 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Col28a1Q2UY11 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Col28a1Q2UY11 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC21.09■□□□□ 0.97
Col28a1Q2UY11 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col28a1Q2UY11 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col28a1Q2UY11 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col28a1Q2UY11 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col28a1Q2UY11 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col28a1Q2UY11 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col28a1Q2UY11 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col28a1Q2UY11 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.08■□□□□ 0.97
Col28a1Q2UY11 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
Col28a1Q2UY11 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
Col28a1Q2UY11 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.07■□□□□ 0.96
Col28a1Q2UY11 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.07■□□□□ 0.96
Col28a1Q2UY11 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Col28a1Q2UY11 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col28a1Q2UY11 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col28a1Q2UY11 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col28a1Q2UY11 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.06■□□□□ 0.96
Col28a1Q2UY11 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Col28a1Q2UY11 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col28a1Q2UY11 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col28a1Q2UY11 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col28a1Q2UY11 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col28a1Q2UY11 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col28a1Q2UY11 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
Col28a1Q2UY11 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Col28a1Q2UY11 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col28a1Q2UY11 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col28a1Q2UY11 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col28a1Q2UY11 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col28a1Q2UY11 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.04■□□□□ 0.96
Col28a1Q2UY11 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Gm28731-201ENSMUST00000185564 1569 ntBASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col28a1Q2UY11 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col28a1Q2UY11 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC21.02■□□□□ 0.96
Col28a1Q2UY11 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Col28a1Q2UY11 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col28a1Q2UY11 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col28a1Q2UY11 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col28a1Q2UY11 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col28a1Q2UY11 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.01■□□□□ 0.95
Col28a1Q2UY11 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Col28a1Q2UY11 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Col28a1Q2UY11 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC21■□□□□ 0.95
Col28a1Q2UY11 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21■□□□□ 0.95
Col28a1Q2UY11 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col28a1Q2UY11 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col28a1Q2UY11 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 103.8 ms