Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cd40lgP27548 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Cd40lgP27548 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cd40lgP27548 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Cd40lgP27548 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Cd40lgP27548 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Cd40lgP27548 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cd40lgP27548 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cd40lgP27548 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
Cd40lgP27548 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Cd40lgP27548 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Cd40lgP27548 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20■□□□□ 0.79
Cd40lgP27548 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
Cd40lgP27548 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cd40lgP27548 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cd40lgP27548 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Cd40lgP27548 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cd40lgP27548 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cd40lgP27548 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cd40lgP27548 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Cd40lgP27548 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cd40lgP27548 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC19.99■□□□□ 0.79
Cd40lgP27548 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Cd40lgP27548 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC19.99■□□□□ 0.79
Cd40lgP27548 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
Cd40lgP27548 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cd40lgP27548 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Cd40lgP27548 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Cd40lgP27548 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.98■□□□□ 0.79
Cd40lgP27548 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.98■□□□□ 0.79
Cd40lgP27548 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cd40lgP27548 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cd40lgP27548 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cd40lgP27548 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cd40lgP27548 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cd40lgP27548 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cd40lgP27548 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Cd40lgP27548 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cd40lgP27548 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cd40lgP27548 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cd40lgP27548 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC19.96■□□□□ 0.79
Cd40lgP27548 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cd40lgP27548 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cd40lgP27548 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cd40lgP27548 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.95■□□□□ 0.78
Cd40lgP27548 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cd40lgP27548 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cd40lgP27548 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.94■□□□□ 0.78
Cd40lgP27548 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cd40lgP27548 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cd40lgP27548 AC164433.2-201ENSMUST00000226346 1701 ntBASIC19.94■□□□□ 0.78
Cd40lgP27548 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cd40lgP27548 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Cd40lgP27548 Gm10420-201ENSMUST00000121713 882 ntBASIC19.94■□□□□ 0.78
Cd40lgP27548 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cd40lgP27548 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cd40lgP27548 AC151971.4-201ENSMUST00000214717 704 ntBASIC19.94■□□□□ 0.78
Cd40lgP27548 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cd40lgP27548 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cd40lgP27548 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cd40lgP27548 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cd40lgP27548 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Cd40lgP27548 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cd40lgP27548 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cd40lgP27548 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cd40lgP27548 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cd40lgP27548 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Cd40lgP27548 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cd40lgP27548 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cd40lgP27548 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Cd40lgP27548 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Cd40lgP27548 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cd40lgP27548 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC19.91■□□□□ 0.78
Cd40lgP27548 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cd40lgP27548 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cd40lgP27548 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.91■□□□□ 0.78
Cd40lgP27548 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Cd40lgP27548 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cd40lgP27548 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Cd40lgP27548 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Cd40lgP27548 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cd40lgP27548 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cd40lgP27548 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Cd40lgP27548 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.9■□□□□ 0.78
Cd40lgP27548 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC19.9■□□□□ 0.78
Cd40lgP27548 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cd40lgP27548 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cd40lgP27548 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cd40lgP27548 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Cd40lgP27548 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.89■□□□□ 0.77
Cd40lgP27548 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cd40lgP27548 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Cd40lgP27548 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Cd40lgP27548 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cd40lgP27548 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Cd40lgP27548 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cd40lgP27548 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
Cd40lgP27548 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC19.88■□□□□ 0.77
Cd40lgP27548 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.87■□□□□ 0.77
Cd40lgP27548 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 95.1 ms