Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk3O35492 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.72■□□□□ 0.91
Clk3O35492 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.71■□□□□ 0.91
Clk3O35492 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clk3O35492 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clk3O35492 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.71■□□□□ 0.91
Clk3O35492 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clk3O35492 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.7■□□□□ 0.9
Clk3O35492 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clk3O35492 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.69■□□□□ 0.9
Clk3O35492 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20.69■□□□□ 0.9
Clk3O35492 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clk3O35492 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Clk3O35492 Terc-201ENSMUST00000082862 423 ntBASIC20.69■□□□□ 0.9
Clk3O35492 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.69■□□□□ 0.9
Clk3O35492 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Clk3O35492 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clk3O35492 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk3O35492 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk3O35492 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk3O35492 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk3O35492 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk3O35492 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Clk3O35492 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk3O35492 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.68■□□□□ 0.9
Clk3O35492 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Clk3O35492 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Clk3O35492 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.67■□□□□ 0.9
Clk3O35492 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Clk3O35492 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clk3O35492 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.67■□□□□ 0.9
Clk3O35492 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.67■□□□□ 0.9
Clk3O35492 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clk3O35492 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Clk3O35492 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clk3O35492 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Clk3O35492 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clk3O35492 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Clk3O35492 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.65■□□□□ 0.9
Clk3O35492 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clk3O35492 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clk3O35492 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Clk3O35492 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clk3O35492 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Clk3O35492 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clk3O35492 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Clk3O35492 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.64■□□□□ 0.89
Clk3O35492 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clk3O35492 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Clk3O35492 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Clk3O35492 Scarna2-201ENSMUST00000157560 414 ntBASIC20.64■□□□□ 0.89
Clk3O35492 Gm9806-201ENSMUST00000051080 552 ntBASIC20.64■□□□□ 0.89
Clk3O35492 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Clk3O35492 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clk3O35492 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Clk3O35492 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clk3O35492 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clk3O35492 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Clk3O35492 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clk3O35492 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Clk3O35492 Gm11687-201ENSMUST00000118911 886 ntBASIC20.63■□□□□ 0.89
Clk3O35492 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Clk3O35492 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clk3O35492 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Clk3O35492 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
Clk3O35492 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clk3O35492 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.62■□□□□ 0.89
Clk3O35492 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clk3O35492 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clk3O35492 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clk3O35492 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Clk3O35492 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Clk3O35492 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Clk3O35492 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Clk3O35492 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.6■□□□□ 0.89
Clk3O35492 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
Clk3O35492 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Clk3O35492 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk3O35492 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.59■□□□□ 0.89
Clk3O35492 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Clk3O35492 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Clk3O35492 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Clk3O35492 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clk3O35492 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clk3O35492 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.59■□□□□ 0.89
Clk3O35492 Gm16437-201ENSMUST00000025669 507 ntBASIC20.59■□□□□ 0.89
Clk3O35492 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clk3O35492 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Clk3O35492 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clk3O35492 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Clk3O35492 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms