Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Scn2aA0A0J9YTW6 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn2aA0A0J9YTW6 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Scn2aA0A0J9YTW6 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn2aA0A0J9YTW6 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.2■□□□□ 0.82
Scn2aA0A0J9YTW6 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn2aA0A0J9YTW6 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Scn2aA0A0J9YTW6 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn2aA0A0J9YTW6 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn2aA0A0J9YTW6 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn2aA0A0J9YTW6 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn2aA0A0J9YTW6 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn2aA0A0J9YTW6 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.17■□□□□ 0.82
Scn2aA0A0J9YTW6 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn2aA0A0J9YTW6 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn2aA0A0J9YTW6 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn2aA0A0J9YTW6 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC20.16■□□□□ 0.82
Scn2aA0A0J9YTW6 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Scn2aA0A0J9YTW6 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scn2aA0A0J9YTW6 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.15■□□□□ 0.82
Scn2aA0A0J9YTW6 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Scn2aA0A0J9YTW6 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Scn2aA0A0J9YTW6 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
Scn2aA0A0J9YTW6 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Scn2aA0A0J9YTW6 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Scn2aA0A0J9YTW6 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn2aA0A0J9YTW6 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn2aA0A0J9YTW6 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Scn2aA0A0J9YTW6 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Scn2aA0A0J9YTW6 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Scn2aA0A0J9YTW6 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn2aA0A0J9YTW6 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn2aA0A0J9YTW6 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn2aA0A0J9YTW6 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.12■□□□□ 0.81
Scn2aA0A0J9YTW6 Gm43566-201ENSMUST00000196851 808 ntBASIC20.12■□□□□ 0.81
Scn2aA0A0J9YTW6 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.12■□□□□ 0.81
Scn2aA0A0J9YTW6 AC117245.4-201ENSMUST00000217388 1646 ntBASIC20.11■□□□□ 0.81
Scn2aA0A0J9YTW6 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Scn2aA0A0J9YTW6 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn2aA0A0J9YTW6 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Scn2aA0A0J9YTW6 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn2aA0A0J9YTW6 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn2aA0A0J9YTW6 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.1■□□□□ 0.81
Scn2aA0A0J9YTW6 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Scn2aA0A0J9YTW6 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Scn2aA0A0J9YTW6 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.09■□□□□ 0.81
Scn2aA0A0J9YTW6 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Scn2aA0A0J9YTW6 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn2aA0A0J9YTW6 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Scn2aA0A0J9YTW6 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.08■□□□□ 0.8
Scn2aA0A0J9YTW6 Gm5812-201ENSMUST00000061073 957 ntBASIC20.08■□□□□ 0.8
Scn2aA0A0J9YTW6 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Scn2aA0A0J9YTW6 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn2aA0A0J9YTW6 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn2aA0A0J9YTW6 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn2aA0A0J9YTW6 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Scn2aA0A0J9YTW6 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Scn2aA0A0J9YTW6 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn2aA0A0J9YTW6 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Scn2aA0A0J9YTW6 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn2aA0A0J9YTW6 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn2aA0A0J9YTW6 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 125.6 ms