Protein–RNA interactions for Protein: A0A0B4J1P1

Trbv30, T cell receptor beta, variable 30 (Fragment), mousemouse

Predictions only

Length 111 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv30A0A0B4J1P1 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv30A0A0B4J1P1 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv30A0A0B4J1P1 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv30A0A0B4J1P1 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC16.47■□□□□ 0.23
Trbv30A0A0B4J1P1 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trbv30A0A0B4J1P1 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv30A0A0B4J1P1 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv30A0A0B4J1P1 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv30A0A0B4J1P1 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv30A0A0B4J1P1 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.22
Trbv30A0A0B4J1P1 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv30A0A0B4J1P1 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv30A0A0B4J1P1 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv30A0A0B4J1P1 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv30A0A0B4J1P1 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv30A0A0B4J1P1 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv30A0A0B4J1P1 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv30A0A0B4J1P1 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv30A0A0B4J1P1 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
Trbv30A0A0B4J1P1 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv30A0A0B4J1P1 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv30A0A0B4J1P1 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC16.44■□□□□ 0.22
Trbv30A0A0B4J1P1 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv30A0A0B4J1P1 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Cap2-205ENSMUST00000225824 1634 ntBASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv30A0A0B4J1P1 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv30A0A0B4J1P1 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv30A0A0B4J1P1 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Trbv30A0A0B4J1P1 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv30A0A0B4J1P1 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv30A0A0B4J1P1 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC16.41■□□□□ 0.22
Trbv30A0A0B4J1P1 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv30A0A0B4J1P1 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv30A0A0B4J1P1 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv30A0A0B4J1P1 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv30A0A0B4J1P1 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv30A0A0B4J1P1 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv30A0A0B4J1P1 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trbv30A0A0B4J1P1 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv30A0A0B4J1P1 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv30A0A0B4J1P1 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv30A0A0B4J1P1 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv30A0A0B4J1P1 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv30A0A0B4J1P1 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv30A0A0B4J1P1 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv30A0A0B4J1P1 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC16.39■□□□□ 0.21
Trbv30A0A0B4J1P1 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv30A0A0B4J1P1 Gm28731-201ENSMUST00000185564 1569 ntBASIC16.38■□□□□ 0.21
Trbv30A0A0B4J1P1 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv30A0A0B4J1P1 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv30A0A0B4J1P1 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv30A0A0B4J1P1 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv30A0A0B4J1P1 AC153524.1-201ENSMUST00000220436 1935 ntBASIC16.37■□□□□ 0.21
Trbv30A0A0B4J1P1 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv30A0A0B4J1P1 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC16.37■□□□□ 0.21
Trbv30A0A0B4J1P1 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv30A0A0B4J1P1 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC16.37■□□□□ 0.21
Trbv30A0A0B4J1P1 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trbv30A0A0B4J1P1 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Gm10420-201ENSMUST00000121713 882 ntBASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Gm6934-201ENSMUST00000194780 1905 ntBASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trbv30A0A0B4J1P1 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv30A0A0B4J1P1 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
Trbv30A0A0B4J1P1 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv30A0A0B4J1P1 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv30A0A0B4J1P1 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv30A0A0B4J1P1 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms