Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC17.13■□□□□ 0.33
Trbv1A0A0B4J1G7 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv1A0A0B4J1G7 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trbv1A0A0B4J1G7 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv1A0A0B4J1G7 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv1A0A0B4J1G7 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv1A0A0B4J1G7 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Trbv1A0A0B4J1G7 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv1A0A0B4J1G7 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv1A0A0B4J1G7 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv1A0A0B4J1G7 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv1A0A0B4J1G7 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv1A0A0B4J1G7 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv1A0A0B4J1G7 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv1A0A0B4J1G7 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv1A0A0B4J1G7 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv1A0A0B4J1G7 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trbv1A0A0B4J1G7 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv1A0A0B4J1G7 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv1A0A0B4J1G7 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv1A0A0B4J1G7 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC17.11■□□□□ 0.33
Trbv1A0A0B4J1G7 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv1A0A0B4J1G7 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv1A0A0B4J1G7 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv1A0A0B4J1G7 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trbv1A0A0B4J1G7 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv1A0A0B4J1G7 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
Trbv1A0A0B4J1G7 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trbv1A0A0B4J1G7 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trbv1A0A0B4J1G7 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trbv1A0A0B4J1G7 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trbv1A0A0B4J1G7 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trbv1A0A0B4J1G7 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Trbv1A0A0B4J1G7 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trbv1A0A0B4J1G7 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv1A0A0B4J1G7 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv1A0A0B4J1G7 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv1A0A0B4J1G7 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trbv1A0A0B4J1G7 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trbv1A0A0B4J1G7 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv1A0A0B4J1G7 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv1A0A0B4J1G7 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trbv1A0A0B4J1G7 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Trbv1A0A0B4J1G7 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv1A0A0B4J1G7 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv1A0A0B4J1G7 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv1A0A0B4J1G7 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trbv1A0A0B4J1G7 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC17.06■□□□□ 0.32
Trbv1A0A0B4J1G7 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trbv1A0A0B4J1G7 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv1A0A0B4J1G7 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC17.05■□□□□ 0.32
Trbv1A0A0B4J1G7 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv1A0A0B4J1G7 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC17.04■□□□□ 0.32
Trbv1A0A0B4J1G7 AC131739.1-201ENSMUST00000221692 1245 ntBASIC17.04■□□□□ 0.32
Trbv1A0A0B4J1G7 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Trbv1A0A0B4J1G7 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv1A0A0B4J1G7 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Trbv1A0A0B4J1G7 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv1A0A0B4J1G7 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv1A0A0B4J1G7 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv1A0A0B4J1G7 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Trbv1A0A0B4J1G7 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv1A0A0B4J1G7 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv1A0A0B4J1G7 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv1A0A0B4J1G7 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Trbv1A0A0B4J1G7 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Trbv1A0A0B4J1G7 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Trbv1A0A0B4J1G7 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Trbv1A0A0B4J1G7 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC17.02■□□□□ 0.32
Trbv1A0A0B4J1G7 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.32
Trbv1A0A0B4J1G7 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Trbv1A0A0B4J1G7 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv1A0A0B4J1G7 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trbv1A0A0B4J1G7 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trbv1A0A0B4J1G7 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Trbv1A0A0B4J1G7 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv1A0A0B4J1G7 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv1A0A0B4J1G7 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv1A0A0B4J1G7 Gm7432-201ENSMUST00000210343 879 ntBASIC17.01■□□□□ 0.31
Trbv1A0A0B4J1G7 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv1A0A0B4J1G7 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trbv1A0A0B4J1G7 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trbv1A0A0B4J1G7 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trbv1A0A0B4J1G7 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trbv1A0A0B4J1G7 Hsf1-207ENSMUST00000228371 2102 ntBASIC17■□□□□ 0.31
Trbv1A0A0B4J1G7 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv1A0A0B4J1G7 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trbv1A0A0B4J1G7 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv1A0A0B4J1G7 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trbv1A0A0B4J1G7 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trbv1A0A0B4J1G7 Gm37136-201ENSMUST00000194368 194 ntBASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms