Protein–RNA interactions for Protein: A0A075B633

Trav8n-2, T cell receptor alpha variable 8n-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8n-2A0A075B633 AC122428.3-201ENSMUST00000215551 2290 ntBASIC20.3■□□□□ 0.84
Trav8n-2A0A075B633 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav8n-2A0A075B633 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav8n-2A0A075B633 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav8n-2A0A075B633 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC20.3■□□□□ 0.84
Trav8n-2A0A075B633 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC20.3■□□□□ 0.84
Trav8n-2A0A075B633 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav8n-2A0A075B633 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav8n-2A0A075B633 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav8n-2A0A075B633 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav8n-2A0A075B633 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav8n-2A0A075B633 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav8n-2A0A075B633 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trav8n-2A0A075B633 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav8n-2A0A075B633 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav8n-2A0A075B633 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.28■□□□□ 0.84
Trav8n-2A0A075B633 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trav8n-2A0A075B633 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC20.28■□□□□ 0.84
Trav8n-2A0A075B633 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav8n-2A0A075B633 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.28■□□□□ 0.84
Trav8n-2A0A075B633 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav8n-2A0A075B633 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trav8n-2A0A075B633 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trav8n-2A0A075B633 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.27■□□□□ 0.84
Trav8n-2A0A075B633 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Trav8n-2A0A075B633 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Trav8n-2A0A075B633 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav8n-2A0A075B633 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav8n-2A0A075B633 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav8n-2A0A075B633 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav8n-2A0A075B633 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav8n-2A0A075B633 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.24■□□□□ 0.83
Trav8n-2A0A075B633 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.24■□□□□ 0.83
Trav8n-2A0A075B633 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav8n-2A0A075B633 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav8n-2A0A075B633 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav8n-2A0A075B633 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.23■□□□□ 0.83
Trav8n-2A0A075B633 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trav8n-2A0A075B633 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav8n-2A0A075B633 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav8n-2A0A075B633 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav8n-2A0A075B633 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav8n-2A0A075B633 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav8n-2A0A075B633 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.21■□□□□ 0.83
Trav8n-2A0A075B633 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Trav8n-2A0A075B633 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Trav8n-2A0A075B633 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trav8n-2A0A075B633 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trav8n-2A0A075B633 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC20.2■□□□□ 0.82
Trav8n-2A0A075B633 Gm13241-201ENSMUST00000094493 780 ntBASIC20.2■□□□□ 0.82
Trav8n-2A0A075B633 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav8n-2A0A075B633 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Trav8n-2A0A075B633 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav8n-2A0A075B633 Gm28536-201ENSMUST00000190971 1317 ntBASIC20.19■□□□□ 0.82
Trav8n-2A0A075B633 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav8n-2A0A075B633 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav8n-2A0A075B633 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.18■□□□□ 0.82
Trav8n-2A0A075B633 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Trav8n-2A0A075B633 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav8n-2A0A075B633 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
Trav8n-2A0A075B633 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav8n-2A0A075B633 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav8n-2A0A075B633 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trav8n-2A0A075B633 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20.17■□□□□ 0.82
Trav8n-2A0A075B633 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav8n-2A0A075B633 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav8n-2A0A075B633 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trav8n-2A0A075B633 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav8n-2A0A075B633 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.16■□□□□ 0.82
Trav8n-2A0A075B633 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC20.16■□□□□ 0.82
Trav8n-2A0A075B633 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trav8n-2A0A075B633 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav8n-2A0A075B633 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.16■□□□□ 0.82
Trav8n-2A0A075B633 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav8n-2A0A075B633 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav8n-2A0A075B633 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav8n-2A0A075B633 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav8n-2A0A075B633 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Trav8n-2A0A075B633 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Trav8n-2A0A075B633 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trav8n-2A0A075B633 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav8n-2A0A075B633 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trav8n-2A0A075B633 Gm40881-201ENSMUST00000223397 166 ntBASIC20.14■□□□□ 0.81
Trav8n-2A0A075B633 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav8n-2A0A075B633 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav8n-2A0A075B633 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav8n-2A0A075B633 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Trav8n-2A0A075B633 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav8n-2A0A075B633 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms