Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
Scn4aQ9ER60 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
Scn4aQ9ER60 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Scn4aQ9ER60 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
Scn4aQ9ER60 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Scn4aQ9ER60 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
Scn4aQ9ER60 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC31.93■■■□□ 2.7
Scn4aQ9ER60 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC31.93■■■□□ 2.7
Scn4aQ9ER60 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Scn4aQ9ER60 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Scn4aQ9ER60 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC31.91■■■□□ 2.7
Scn4aQ9ER60 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Scn4aQ9ER60 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Scn4aQ9ER60 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Scn4aQ9ER60 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Scn4aQ9ER60 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Scn4aQ9ER60 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC31.91■■■□□ 2.7
Scn4aQ9ER60 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC31.91■■■□□ 2.7
Scn4aQ9ER60 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC31.91■■■□□ 2.7
Scn4aQ9ER60 Gm16464-201ENSMUST00000117815 1095 ntBASIC31.9■■■□□ 2.7
Scn4aQ9ER60 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
Scn4aQ9ER60 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
Scn4aQ9ER60 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Scn4aQ9ER60 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC31.89■■■□□ 2.7
Scn4aQ9ER60 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Scn4aQ9ER60 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Scn4aQ9ER60 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Scn4aQ9ER60 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC31.89■■■□□ 2.69
Scn4aQ9ER60 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
Scn4aQ9ER60 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Scn4aQ9ER60 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
Scn4aQ9ER60 AC164629.5-201ENSMUST00000220387 632 ntBASIC31.88■■■□□ 2.69
Scn4aQ9ER60 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Scn4aQ9ER60 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Scn4aQ9ER60 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Scn4aQ9ER60 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Scn4aQ9ER60 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC31.86■■■□□ 2.69
Scn4aQ9ER60 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Scn4aQ9ER60 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC31.86■■■□□ 2.69
Scn4aQ9ER60 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC31.86■■■□□ 2.69
Scn4aQ9ER60 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Scn4aQ9ER60 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Scn4aQ9ER60 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC31.84■■■□□ 2.69
Scn4aQ9ER60 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
Scn4aQ9ER60 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Scn4aQ9ER60 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC31.83■■■□□ 2.69
Scn4aQ9ER60 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Scn4aQ9ER60 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
Scn4aQ9ER60 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC31.82■■■□□ 2.68
Scn4aQ9ER60 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC31.82■■■□□ 2.68
Scn4aQ9ER60 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
Scn4aQ9ER60 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC31.82■■■□□ 2.68
Scn4aQ9ER60 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.68
Scn4aQ9ER60 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Scn4aQ9ER60 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Scn4aQ9ER60 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
Scn4aQ9ER60 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Scn4aQ9ER60 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC31.81■■■□□ 2.68
Scn4aQ9ER60 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Scn4aQ9ER60 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC31.8■■■□□ 2.68
Scn4aQ9ER60 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC31.8■■■□□ 2.68
Scn4aQ9ER60 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Scn4aQ9ER60 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC31.79■■■□□ 2.68
Scn4aQ9ER60 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Scn4aQ9ER60 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Scn4aQ9ER60 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC31.79■■■□□ 2.68
Scn4aQ9ER60 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
Scn4aQ9ER60 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Scn4aQ9ER60 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Scn4aQ9ER60 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC31.77■■■□□ 2.68
Scn4aQ9ER60 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC31.76■■■□□ 2.67
Scn4aQ9ER60 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC31.75■■■□□ 2.67
Scn4aQ9ER60 Gm40881-201ENSMUST00000223397 166 ntBASIC31.75■■■□□ 2.67
Scn4aQ9ER60 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Scn4aQ9ER60 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Scn4aQ9ER60 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Scn4aQ9ER60 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Scn4aQ9ER60 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC31.71■■■□□ 2.67
Scn4aQ9ER60 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC31.71■■■□□ 2.67
Scn4aQ9ER60 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC31.71■■■□□ 2.67
Scn4aQ9ER60 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Scn4aQ9ER60 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Scn4aQ9ER60 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC31.7■■■□□ 2.66
Scn4aQ9ER60 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC31.69■■■□□ 2.66
Scn4aQ9ER60 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
Scn4aQ9ER60 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Scn4aQ9ER60 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC31.67■■■□□ 2.66
Scn4aQ9ER60 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Scn4aQ9ER60 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC31.67■■■□□ 2.66
Scn4aQ9ER60 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC31.67■■■□□ 2.66
Scn4aQ9ER60 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Scn4aQ9ER60 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Scn4aQ9ER60 AC116713.1-201ENSMUST00000215074 430 ntBASIC31.66■■■□□ 2.66
Scn4aQ9ER60 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC31.66■■■□□ 2.66
Scn4aQ9ER60 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Scn4aQ9ER60 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Scn4aQ9ER60 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
Scn4aQ9ER60 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC31.66■■■□□ 2.66
Scn4aQ9ER60 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
Scn4aQ9ER60 Gm2011-201ENSMUST00000203124 1263 ntBASIC31.65■■■□□ 2.66
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms