Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Cpsf1Q9EPU4 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Cpsf1Q9EPU4 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Cpsf1Q9EPU4 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
Cpsf1Q9EPU4 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Cpsf1Q9EPU4 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Cpsf1Q9EPU4 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Cpsf1Q9EPU4 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Cpsf1Q9EPU4 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Cpsf1Q9EPU4 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Cpsf1Q9EPU4 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Cpsf1Q9EPU4 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Cpsf1Q9EPU4 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
Cpsf1Q9EPU4 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Cpsf1Q9EPU4 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Cpsf1Q9EPU4 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Cpsf1Q9EPU4 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC31.2■■■□□ 2.58
Cpsf1Q9EPU4 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
Cpsf1Q9EPU4 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Cpsf1Q9EPU4 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
Cpsf1Q9EPU4 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Cpsf1Q9EPU4 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Cpsf1Q9EPU4 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
Cpsf1Q9EPU4 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC31.17■■■□□ 2.58
Cpsf1Q9EPU4 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Cpsf1Q9EPU4 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Cpsf1Q9EPU4 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Cpsf1Q9EPU4 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Cpsf1Q9EPU4 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC31.15■■■□□ 2.58
Cpsf1Q9EPU4 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Cpsf1Q9EPU4 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Cpsf1Q9EPU4 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Cpsf1Q9EPU4 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Cpsf1Q9EPU4 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Cpsf1Q9EPU4 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Cpsf1Q9EPU4 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
Cpsf1Q9EPU4 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Cpsf1Q9EPU4 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC31.13■■■□□ 2.57
Cpsf1Q9EPU4 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Cpsf1Q9EPU4 Gm43566-201ENSMUST00000196851 808 ntBASIC31.13■■■□□ 2.57
Cpsf1Q9EPU4 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC31.13■■■□□ 2.57
Cpsf1Q9EPU4 AC153524.1-201ENSMUST00000220436 1935 ntBASIC31.12■■■□□ 2.57
Cpsf1Q9EPU4 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Cpsf1Q9EPU4 Gm13238-201ENSMUST00000117655 780 ntBASIC31.12■■■□□ 2.57
Cpsf1Q9EPU4 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC31.12■■■□□ 2.57
Cpsf1Q9EPU4 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC31.12■■■□□ 2.57
Cpsf1Q9EPU4 Gm28731-201ENSMUST00000185564 1569 ntBASIC31.12■■■□□ 2.57
Cpsf1Q9EPU4 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
Cpsf1Q9EPU4 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Cpsf1Q9EPU4 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cpsf1Q9EPU4 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cpsf1Q9EPU4 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cpsf1Q9EPU4 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cpsf1Q9EPU4 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cpsf1Q9EPU4 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
Cpsf1Q9EPU4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC31.09■■■□□ 2.57
Cpsf1Q9EPU4 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
Cpsf1Q9EPU4 AC117245.4-201ENSMUST00000217388 1646 ntBASIC31.09■■■□□ 2.57
Cpsf1Q9EPU4 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC31.08■■■□□ 2.57
Cpsf1Q9EPU4 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cpsf1Q9EPU4 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cpsf1Q9EPU4 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC31.07■■■□□ 2.57
Cpsf1Q9EPU4 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC31.07■■■□□ 2.57
Cpsf1Q9EPU4 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.57
Cpsf1Q9EPU4 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.57
Cpsf1Q9EPU4 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Cpsf1Q9EPU4 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Cpsf1Q9EPU4 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
Cpsf1Q9EPU4 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Cpsf1Q9EPU4 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC31.07■■■□□ 2.56
Cpsf1Q9EPU4 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Cpsf1Q9EPU4 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
Cpsf1Q9EPU4 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Cpsf1Q9EPU4 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC31.05■■■□□ 2.56
Cpsf1Q9EPU4 Gm45444-201ENSMUST00000211394 898 ntBASIC31.05■■■□□ 2.56
Cpsf1Q9EPU4 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Cpsf1Q9EPU4 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Cpsf1Q9EPU4 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
Cpsf1Q9EPU4 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC31.03■■■□□ 2.56
Cpsf1Q9EPU4 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Cpsf1Q9EPU4 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Cpsf1Q9EPU4 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Cpsf1Q9EPU4 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.56
Cpsf1Q9EPU4 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Cpsf1Q9EPU4 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
Cpsf1Q9EPU4 Gm5522-201ENSMUST00000189483 1242 ntBASIC31■■■□□ 2.55
Cpsf1Q9EPU4 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC31■■■□□ 2.55
Cpsf1Q9EPU4 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Cpsf1Q9EPU4 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC31■■■□□ 2.55
Cpsf1Q9EPU4 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Cpsf1Q9EPU4 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC31■■■□□ 2.55
Cpsf1Q9EPU4 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Cpsf1Q9EPU4 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
Cpsf1Q9EPU4 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cpsf1Q9EPU4 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
Cpsf1Q9EPU4 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cpsf1Q9EPU4 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC30.98■■■□□ 2.55
Cpsf1Q9EPU4 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
Cpsf1Q9EPU4 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Cpsf1Q9EPU4 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms