Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Brf1Q8CFK2 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Brf1Q8CFK2 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Brf1Q8CFK2 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC26.76■■□□□ 1.87
Brf1Q8CFK2 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC26.76■■□□□ 1.87
Brf1Q8CFK2 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Brf1Q8CFK2 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Brf1Q8CFK2 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Brf1Q8CFK2 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Brf1Q8CFK2 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Brf1Q8CFK2 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Brf1Q8CFK2 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
Brf1Q8CFK2 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Brf1Q8CFK2 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Brf1Q8CFK2 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC26.73■■□□□ 1.87
Brf1Q8CFK2 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC26.73■■□□□ 1.87
Brf1Q8CFK2 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Brf1Q8CFK2 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Brf1Q8CFK2 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Brf1Q8CFK2 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC26.72■■□□□ 1.87
Brf1Q8CFK2 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
Brf1Q8CFK2 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Brf1Q8CFK2 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Brf1Q8CFK2 Gm14523-201ENSMUST00000117260 558 ntBASIC26.72■■□□□ 1.87
Brf1Q8CFK2 AC117769.4-201ENSMUST00000225679 685 ntBASIC26.72■■□□□ 1.87
Brf1Q8CFK2 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Brf1Q8CFK2 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
Brf1Q8CFK2 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
Brf1Q8CFK2 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
Brf1Q8CFK2 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Brf1Q8CFK2 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC26.71■■□□□ 1.87
Brf1Q8CFK2 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Brf1Q8CFK2 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Brf1Q8CFK2 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Brf1Q8CFK2 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Brf1Q8CFK2 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Gm12366-201ENSMUST00000121722 873 ntBASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Gm5786-201ENSMUST00000085368 882 ntBASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Brf1Q8CFK2 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
Brf1Q8CFK2 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC26.69■■□□□ 1.86
Brf1Q8CFK2 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Brf1Q8CFK2 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
Brf1Q8CFK2 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Brf1Q8CFK2 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Brf1Q8CFK2 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Brf1Q8CFK2 AC153524.1-201ENSMUST00000220436 1935 ntBASIC26.69■■□□□ 1.86
Brf1Q8CFK2 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Brf1Q8CFK2 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Brf1Q8CFK2 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
Brf1Q8CFK2 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Brf1Q8CFK2 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Brf1Q8CFK2 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Brf1Q8CFK2 Gm7332-201ENSMUST00000118351 454 ntBASIC26.67■■□□□ 1.86
Brf1Q8CFK2 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC26.67■■□□□ 1.86
Brf1Q8CFK2 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Brf1Q8CFK2 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Brf1Q8CFK2 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Brf1Q8CFK2 Gm28731-201ENSMUST00000185564 1569 ntBASIC26.66■■□□□ 1.86
Brf1Q8CFK2 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
Brf1Q8CFK2 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
Brf1Q8CFK2 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC26.65■■□□□ 1.86
Brf1Q8CFK2 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
Brf1Q8CFK2 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Brf1Q8CFK2 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Brf1Q8CFK2 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Brf1Q8CFK2 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC26.64■■□□□ 1.86
Brf1Q8CFK2 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
Brf1Q8CFK2 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Brf1Q8CFK2 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Brf1Q8CFK2 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Brf1Q8CFK2 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
Brf1Q8CFK2 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Brf1Q8CFK2 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Brf1Q8CFK2 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Brf1Q8CFK2 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC26.62■■□□□ 1.85
Brf1Q8CFK2 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Brf1Q8CFK2 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC26.62■■□□□ 1.85
Brf1Q8CFK2 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
Brf1Q8CFK2 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Brf1Q8CFK2 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Brf1Q8CFK2 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Brf1Q8CFK2 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC26.6■■□□□ 1.85
Brf1Q8CFK2 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Brf1Q8CFK2 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Brf1Q8CFK2 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Brf1Q8CFK2 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC26.59■■□□□ 1.85
Brf1Q8CFK2 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Brf1Q8CFK2 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Brf1Q8CFK2 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Brf1Q8CFK2 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Brf1Q8CFK2 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Brf1Q8CFK2 Cap2-205ENSMUST00000225824 1634 ntBASIC26.58■■□□□ 1.85
Brf1Q8CFK2 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 368.5 ms