Protein–RNA interactions for Protein: Q8C4J0

Ccdc60, Coiled-coil domain-containing protein 60, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc60Q8C4J0 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ccdc60Q8C4J0 Gm7332-201ENSMUST00000118351 454 ntBASIC28.35■■■□□ 2.13
Ccdc60Q8C4J0 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ccdc60Q8C4J0 Cap2-205ENSMUST00000225824 1634 ntBASIC28.35■■■□□ 2.13
Ccdc60Q8C4J0 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ccdc60Q8C4J0 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
Ccdc60Q8C4J0 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Ccdc60Q8C4J0 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Ccdc60Q8C4J0 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
Ccdc60Q8C4J0 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Ccdc60Q8C4J0 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC28.32■■■□□ 2.12
Ccdc60Q8C4J0 AC117769.4-201ENSMUST00000225679 685 ntBASIC28.32■■■□□ 2.12
Ccdc60Q8C4J0 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
Ccdc60Q8C4J0 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ccdc60Q8C4J0 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC28.31■■■□□ 2.12
Ccdc60Q8C4J0 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ccdc60Q8C4J0 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Ccdc60Q8C4J0 Gm6934-201ENSMUST00000194780 1905 ntBASIC28.3■■■□□ 2.12
Ccdc60Q8C4J0 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC28.3■■■□□ 2.12
Ccdc60Q8C4J0 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Ccdc60Q8C4J0 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Ccdc60Q8C4J0 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC28.29■■■□□ 2.12
Ccdc60Q8C4J0 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ccdc60Q8C4J0 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC28.28■■■□□ 2.12
Ccdc60Q8C4J0 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Ccdc60Q8C4J0 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ccdc60Q8C4J0 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ccdc60Q8C4J0 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ccdc60Q8C4J0 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Ccdc60Q8C4J0 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Ccdc60Q8C4J0 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
Ccdc60Q8C4J0 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Ccdc60Q8C4J0 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
Ccdc60Q8C4J0 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
Ccdc60Q8C4J0 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Ccdc60Q8C4J0 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Ccdc60Q8C4J0 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Ccdc60Q8C4J0 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Ccdc60Q8C4J0 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC28.25■■■□□ 2.11
Ccdc60Q8C4J0 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC28.25■■■□□ 2.11
Ccdc60Q8C4J0 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Ccdc60Q8C4J0 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC28.25■■■□□ 2.11
Ccdc60Q8C4J0 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Ccdc60Q8C4J0 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Ccdc60Q8C4J0 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC28.24■■■□□ 2.11
Ccdc60Q8C4J0 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
Ccdc60Q8C4J0 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
Ccdc60Q8C4J0 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Ccdc60Q8C4J0 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Ccdc60Q8C4J0 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Ccdc60Q8C4J0 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Ccdc60Q8C4J0 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
Ccdc60Q8C4J0 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Ccdc60Q8C4J0 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Ccdc60Q8C4J0 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
Ccdc60Q8C4J0 AC153524.1-201ENSMUST00000220436 1935 ntBASIC28.22■■■□□ 2.11
Ccdc60Q8C4J0 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Ccdc60Q8C4J0 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Ccdc60Q8C4J0 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
Ccdc60Q8C4J0 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ccdc60Q8C4J0 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ccdc60Q8C4J0 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Ccdc60Q8C4J0 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Ccdc60Q8C4J0 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
Ccdc60Q8C4J0 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC28.2■■■□□ 2.1
Ccdc60Q8C4J0 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC28.2■■■□□ 2.1
Ccdc60Q8C4J0 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ccdc60Q8C4J0 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ccdc60Q8C4J0 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Ccdc60Q8C4J0 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Ccdc60Q8C4J0 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ccdc60Q8C4J0 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ccdc60Q8C4J0 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Ccdc60Q8C4J0 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Ccdc60Q8C4J0 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Ccdc60Q8C4J0 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
Ccdc60Q8C4J0 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC28.16■■■□□ 2.1
Ccdc60Q8C4J0 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
Ccdc60Q8C4J0 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
Ccdc60Q8C4J0 Gm28731-201ENSMUST00000185564 1569 ntBASIC28.15■■■□□ 2.1
Ccdc60Q8C4J0 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Ccdc60Q8C4J0 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Ccdc60Q8C4J0 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
Ccdc60Q8C4J0 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Ccdc60Q8C4J0 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.1
Ccdc60Q8C4J0 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Ccdc60Q8C4J0 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC28.14■■■□□ 2.1
Ccdc60Q8C4J0 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
Ccdc60Q8C4J0 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
Ccdc60Q8C4J0 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC28.12■■■□□ 2.09
Ccdc60Q8C4J0 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Ccdc60Q8C4J0 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
Ccdc60Q8C4J0 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
Ccdc60Q8C4J0 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Ccdc60Q8C4J0 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ccdc60Q8C4J0 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ccdc60Q8C4J0 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Ccdc60Q8C4J0 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ccdc60Q8C4J0 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ccdc60Q8C4J0 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Retrieved 100 of 76,532 protein–RNA pairs in 69.7 ms