Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC31.75■■■□□ 2.67
Usp47Q8BY87 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
Usp47Q8BY87 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Usp47Q8BY87 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
Usp47Q8BY87 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC31.73■■■□□ 2.67
Usp47Q8BY87 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Usp47Q8BY87 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Usp47Q8BY87 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
Usp47Q8BY87 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Usp47Q8BY87 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Usp47Q8BY87 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
Usp47Q8BY87 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Usp47Q8BY87 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Usp47Q8BY87 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC31.71■■■□□ 2.67
Usp47Q8BY87 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Usp47Q8BY87 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Usp47Q8BY87 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Usp47Q8BY87 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
Usp47Q8BY87 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.66
Usp47Q8BY87 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC31.69■■■□□ 2.66
Usp47Q8BY87 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Usp47Q8BY87 Gm5921-201ENSMUST00000075898 882 ntBASIC31.69■■■□□ 2.66
Usp47Q8BY87 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Usp47Q8BY87 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Usp47Q8BY87 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Usp47Q8BY87 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Usp47Q8BY87 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Usp47Q8BY87 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC31.68■■■□□ 2.66
Usp47Q8BY87 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Usp47Q8BY87 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Usp47Q8BY87 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Usp47Q8BY87 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Usp47Q8BY87 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Usp47Q8BY87 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Usp47Q8BY87 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Usp47Q8BY87 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
Usp47Q8BY87 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Usp47Q8BY87 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Usp47Q8BY87 AC153524.1-201ENSMUST00000220436 1935 ntBASIC31.66■■■□□ 2.66
Usp47Q8BY87 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Usp47Q8BY87 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Usp47Q8BY87 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC31.66■■■□□ 2.66
Usp47Q8BY87 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Usp47Q8BY87 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC31.66■■■□□ 2.66
Usp47Q8BY87 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Usp47Q8BY87 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Usp47Q8BY87 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Usp47Q8BY87 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
Usp47Q8BY87 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Usp47Q8BY87 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Usp47Q8BY87 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Usp47Q8BY87 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC31.62■■■□□ 2.65
Usp47Q8BY87 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Usp47Q8BY87 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Usp47Q8BY87 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Usp47Q8BY87 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Usp47Q8BY87 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Usp47Q8BY87 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Usp47Q8BY87 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Usp47Q8BY87 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Usp47Q8BY87 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Usp47Q8BY87 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Usp47Q8BY87 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Usp47Q8BY87 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
Usp47Q8BY87 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Usp47Q8BY87 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Usp47Q8BY87 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Usp47Q8BY87 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Usp47Q8BY87 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Usp47Q8BY87 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC31.56■■■□□ 2.64
Usp47Q8BY87 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Usp47Q8BY87 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Usp47Q8BY87 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Usp47Q8BY87 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Usp47Q8BY87 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Usp47Q8BY87 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
Usp47Q8BY87 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Usp47Q8BY87 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Usp47Q8BY87 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
Usp47Q8BY87 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
Usp47Q8BY87 AC117245.4-201ENSMUST00000217388 1646 ntBASIC31.54■■■□□ 2.64
Usp47Q8BY87 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Usp47Q8BY87 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
Usp47Q8BY87 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC31.53■■■□□ 2.64
Usp47Q8BY87 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC31.53■■■□□ 2.64
Usp47Q8BY87 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Usp47Q8BY87 Gm28731-201ENSMUST00000185564 1569 ntBASIC31.52■■■□□ 2.64
Usp47Q8BY87 Gm6934-201ENSMUST00000194780 1905 ntBASIC31.52■■■□□ 2.64
Usp47Q8BY87 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Usp47Q8BY87 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Usp47Q8BY87 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
Usp47Q8BY87 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC31.51■■■□□ 2.63
Usp47Q8BY87 Gm13238-201ENSMUST00000117655 780 ntBASIC31.51■■■□□ 2.63
Usp47Q8BY87 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
Usp47Q8BY87 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
Usp47Q8BY87 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC31.5■■■□□ 2.63
Usp47Q8BY87 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Usp47Q8BY87 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
Usp47Q8BY87 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
Usp47Q8BY87 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms