Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Notumos-201ENSMUST00000151998 2659 ntBASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Clrn3Q8BHH8 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Clrn3Q8BHH8 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clrn3Q8BHH8 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clrn3Q8BHH8 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
Clrn3Q8BHH8 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clrn3Q8BHH8 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clrn3Q8BHH8 Scarna2-201ENSMUST00000157560 414 ntBASIC20.62■□□□□ 0.89
Clrn3Q8BHH8 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clrn3Q8BHH8 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Clrn3Q8BHH8 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clrn3Q8BHH8 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clrn3Q8BHH8 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clrn3Q8BHH8 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clrn3Q8BHH8 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clrn3Q8BHH8 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.6■□□□□ 0.89
Clrn3Q8BHH8 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clrn3Q8BHH8 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clrn3Q8BHH8 Gm11687-201ENSMUST00000118911 886 ntBASIC20.6■□□□□ 0.89
Clrn3Q8BHH8 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clrn3Q8BHH8 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clrn3Q8BHH8 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.6■□□□□ 0.89
Clrn3Q8BHH8 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clrn3Q8BHH8 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clrn3Q8BHH8 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clrn3Q8BHH8 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clrn3Q8BHH8 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
Clrn3Q8BHH8 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clrn3Q8BHH8 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clrn3Q8BHH8 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.58■□□□□ 0.89
Clrn3Q8BHH8 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clrn3Q8BHH8 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clrn3Q8BHH8 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
Clrn3Q8BHH8 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Clrn3Q8BHH8 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Clrn3Q8BHH8 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Clrn3Q8BHH8 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Clrn3Q8BHH8 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Clrn3Q8BHH8 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.57■□□□□ 0.88
Clrn3Q8BHH8 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Clrn3Q8BHH8 Gm16437-201ENSMUST00000025669 507 ntBASIC20.56■□□□□ 0.88
Clrn3Q8BHH8 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
Clrn3Q8BHH8 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.56■□□□□ 0.88
Clrn3Q8BHH8 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Clrn3Q8BHH8 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Clrn3Q8BHH8 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Clrn3Q8BHH8 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Clrn3Q8BHH8 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Clrn3Q8BHH8 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Clrn3Q8BHH8 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Clrn3Q8BHH8 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Clrn3Q8BHH8 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
Clrn3Q8BHH8 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Clrn3Q8BHH8 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Clrn3Q8BHH8 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Clrn3Q8BHH8 Gm44428-201ENSMUST00000204474 874 ntBASIC20.52■□□□□ 0.88
Clrn3Q8BHH8 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Clrn3Q8BHH8 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Clrn3Q8BHH8 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.52■□□□□ 0.88
Clrn3Q8BHH8 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Clrn3Q8BHH8 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.51■□□□□ 0.87
Clrn3Q8BHH8 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Clrn3Q8BHH8 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC20.51■□□□□ 0.87
Clrn3Q8BHH8 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.51■□□□□ 0.87
Clrn3Q8BHH8 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Clrn3Q8BHH8 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Clrn3Q8BHH8 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Clrn3Q8BHH8 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Clrn3Q8BHH8 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Clrn3Q8BHH8 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Clrn3Q8BHH8 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Clrn3Q8BHH8 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.5■□□□□ 0.87
Clrn3Q8BHH8 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Clrn3Q8BHH8 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Clrn3Q8BHH8 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.49■□□□□ 0.87
Clrn3Q8BHH8 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms