Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim40Q3UWA4 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.71■□□□□ 0.91
Trim40Q3UWA4 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC20.71■□□□□ 0.91
Trim40Q3UWA4 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.71■□□□□ 0.91
Trim40Q3UWA4 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim40Q3UWA4 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Trim40Q3UWA4 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trim40Q3UWA4 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim40Q3UWA4 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Trim40Q3UWA4 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim40Q3UWA4 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.7■□□□□ 0.9
Trim40Q3UWA4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim40Q3UWA4 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim40Q3UWA4 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trim40Q3UWA4 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim40Q3UWA4 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim40Q3UWA4 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Trim40Q3UWA4 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim40Q3UWA4 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Trim40Q3UWA4 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Trim40Q3UWA4 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.67■□□□□ 0.9
Trim40Q3UWA4 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim40Q3UWA4 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
Trim40Q3UWA4 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.67■□□□□ 0.9
Trim40Q3UWA4 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim40Q3UWA4 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim40Q3UWA4 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Trim40Q3UWA4 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim40Q3UWA4 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
Trim40Q3UWA4 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim40Q3UWA4 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.9
Trim40Q3UWA4 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Trim40Q3UWA4 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim40Q3UWA4 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim40Q3UWA4 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim40Q3UWA4 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim40Q3UWA4 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Trim40Q3UWA4 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Trim40Q3UWA4 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
Trim40Q3UWA4 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Trim40Q3UWA4 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim40Q3UWA4 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim40Q3UWA4 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Trim40Q3UWA4 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim40Q3UWA4 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim40Q3UWA4 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim40Q3UWA4 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim40Q3UWA4 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim40Q3UWA4 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim40Q3UWA4 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Trim40Q3UWA4 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim40Q3UWA4 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim40Q3UWA4 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Trim40Q3UWA4 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim40Q3UWA4 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.59■□□□□ 0.89
Trim40Q3UWA4 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim40Q3UWA4 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim40Q3UWA4 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Trim40Q3UWA4 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim40Q3UWA4 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Trim40Q3UWA4 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
Trim40Q3UWA4 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim40Q3UWA4 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Trim40Q3UWA4 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trim40Q3UWA4 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trim40Q3UWA4 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Trim40Q3UWA4 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Trim40Q3UWA4 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Trim40Q3UWA4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim40Q3UWA4 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim40Q3UWA4 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim40Q3UWA4 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim40Q3UWA4 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trim40Q3UWA4 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim40Q3UWA4 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim40Q3UWA4 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
Trim40Q3UWA4 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trim40Q3UWA4 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Trim40Q3UWA4 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trim40Q3UWA4 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC20.55■□□□□ 0.88
Trim40Q3UWA4 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim40Q3UWA4 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim40Q3UWA4 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim40Q3UWA4 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Trim40Q3UWA4 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.55■□□□□ 0.88
Trim40Q3UWA4 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trim40Q3UWA4 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim40Q3UWA4 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim40Q3UWA4 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trim40Q3UWA4 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trim40Q3UWA4 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim40Q3UWA4 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
Trim40Q3UWA4 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC20.53■□□□□ 0.88
Trim40Q3UWA4 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Trim40Q3UWA4 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim40Q3UWA4 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.53■□□□□ 0.88
Trim40Q3UWA4 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trim40Q3UWA4 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Trim40Q3UWA4 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trim40Q3UWA4 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms