Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav11A0A0B4J1J9 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Trav11A0A0B4J1J9 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav11A0A0B4J1J9 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Trav11A0A0B4J1J9 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav11A0A0B4J1J9 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav11A0A0B4J1J9 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav11A0A0B4J1J9 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav11A0A0B4J1J9 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC15.12■□□□□ 0.01
Trav11A0A0B4J1J9 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC15.12■□□□□ 0.01
Trav11A0A0B4J1J9 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trav11A0A0B4J1J9 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trav11A0A0B4J1J9 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Trav11A0A0B4J1J9 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav11A0A0B4J1J9 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trav11A0A0B4J1J9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC15.11■□□□□ 0.01
Trav11A0A0B4J1J9 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav11A0A0B4J1J9 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav11A0A0B4J1J9 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trav11A0A0B4J1J9 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav11A0A0B4J1J9 Gm6934-201ENSMUST00000194780 1905 ntBASIC15.09■□□□□ 0.01
Trav11A0A0B4J1J9 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav11A0A0B4J1J9 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav11A0A0B4J1J9 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
Trav11A0A0B4J1J9 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Trav11A0A0B4J1J9 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav11A0A0B4J1J9 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav11A0A0B4J1J9 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Trav11A0A0B4J1J9 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trav11A0A0B4J1J9 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 Gm13042-201ENSMUST00000119244 1955 ntBASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 Gm37136-201ENSMUST00000194368 194 ntBASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trav11A0A0B4J1J9 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Trav11A0A0B4J1J9 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC15.07■□□□□ 0
Trav11A0A0B4J1J9 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Trav11A0A0B4J1J9 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trav11A0A0B4J1J9 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trav11A0A0B4J1J9 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trav11A0A0B4J1J9 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trav11A0A0B4J1J9 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trav11A0A0B4J1J9 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trav11A0A0B4J1J9 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trav11A0A0B4J1J9 Nkain2-201ENSMUST00000092602 558 ntBASIC15.05■□□□□ -0
Trav11A0A0B4J1J9 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trav11A0A0B4J1J9 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC15.05■□□□□ -0
Trav11A0A0B4J1J9 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trav11A0A0B4J1J9 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trav11A0A0B4J1J9 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trav11A0A0B4J1J9 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trav11A0A0B4J1J9 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Trav11A0A0B4J1J9 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Trav11A0A0B4J1J9 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Trav11A0A0B4J1J9 Dmtn-209ENSMUST00000228295 2572 ntBASIC15.03■□□□□ -0
Trav11A0A0B4J1J9 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Trav11A0A0B4J1J9 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trav11A0A0B4J1J9 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Trav11A0A0B4J1J9 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trav11A0A0B4J1J9 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Trav11A0A0B4J1J9 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Trav11A0A0B4J1J9 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trav11A0A0B4J1J9 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trav11A0A0B4J1J9 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trav11A0A0B4J1J9 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC15.02□□□□□ -0.01
Trav11A0A0B4J1J9 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trav11A0A0B4J1J9 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trav11A0A0B4J1J9 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Trav11A0A0B4J1J9 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC15.01□□□□□ -0.01
Trav11A0A0B4J1J9 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Trav11A0A0B4J1J9 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Trav11A0A0B4J1J9 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Trav11A0A0B4J1J9 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Trav11A0A0B4J1J9 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
Trav11A0A0B4J1J9 Gm26766-202ENSMUST00000227544 2347 ntBASIC15.01□□□□□ -0.01
Trav11A0A0B4J1J9 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms