Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Scn4aQ9ER60 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC32.29■■■□□ 2.76
Scn4aQ9ER60 Gm27454-201ENSMUST00000185090 204 ntBASIC32.28■■■□□ 2.76
Scn4aQ9ER60 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC32.28■■■□□ 2.76
Scn4aQ9ER60 Appbp2os-202ENSMUST00000206972 447 ntBASIC32.28■■■□□ 2.76
Scn4aQ9ER60 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Scn4aQ9ER60 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC32.27■■■□□ 2.76
Scn4aQ9ER60 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
Scn4aQ9ER60 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC32.26■■■□□ 2.76
Scn4aQ9ER60 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
Scn4aQ9ER60 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC32.26■■■□□ 2.76
Scn4aQ9ER60 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
Scn4aQ9ER60 Gm45417-201ENSMUST00000209533 758 ntBASIC32.26■■■□□ 2.75
Scn4aQ9ER60 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC32.26■■■□□ 2.75
Scn4aQ9ER60 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
Scn4aQ9ER60 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Scn4aQ9ER60 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC32.25■■■□□ 2.75
Scn4aQ9ER60 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
Scn4aQ9ER60 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
Scn4aQ9ER60 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
Scn4aQ9ER60 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
Scn4aQ9ER60 Gm22238-201ENSMUST00000175222 88 ntBASIC32.22■■■□□ 2.75
Scn4aQ9ER60 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Scn4aQ9ER60 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
Scn4aQ9ER60 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC32.19■■■□□ 2.74
Scn4aQ9ER60 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Scn4aQ9ER60 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
Scn4aQ9ER60 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Scn4aQ9ER60 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
Scn4aQ9ER60 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Scn4aQ9ER60 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Scn4aQ9ER60 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
Scn4aQ9ER60 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Scn4aQ9ER60 AC140930.3-201ENSMUST00000222935 274 ntBASIC32.16■■■□□ 2.74
Scn4aQ9ER60 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC32.15■■■□□ 2.74
Scn4aQ9ER60 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC32.15■■■□□ 2.74
Scn4aQ9ER60 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Scn4aQ9ER60 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC32.14■■■□□ 2.74
Scn4aQ9ER60 Flvcr1-202ENSMUST00000191946 1216 ntBASIC32.14■■■□□ 2.74
Scn4aQ9ER60 Gm7417-201ENSMUST00000192950 473 ntBASIC32.14■■■□□ 2.74
Scn4aQ9ER60 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC32.14■■■□□ 2.74
Scn4aQ9ER60 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Scn4aQ9ER60 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC32.14■■■□□ 2.73
Scn4aQ9ER60 Gm37847-201ENSMUST00000192163 1497 ntBASIC32.13■■■□□ 2.73
Scn4aQ9ER60 Gm31748-201ENSMUST00000194938 1497 ntBASIC32.13■■■□□ 2.73
Scn4aQ9ER60 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Scn4aQ9ER60 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC32.12■■■□□ 2.73
Scn4aQ9ER60 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC32.12■■■□□ 2.73
Scn4aQ9ER60 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC32.11■■■□□ 2.73
Scn4aQ9ER60 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Scn4aQ9ER60 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Scn4aQ9ER60 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Scn4aQ9ER60 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC32.11■■■□□ 2.73
Scn4aQ9ER60 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Scn4aQ9ER60 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
Scn4aQ9ER60 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Scn4aQ9ER60 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Scn4aQ9ER60 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Scn4aQ9ER60 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC32.07■■■□□ 2.73
Scn4aQ9ER60 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC32.07■■■□□ 2.73
Scn4aQ9ER60 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
Scn4aQ9ER60 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC32.06■■■□□ 2.72
Scn4aQ9ER60 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC32.06■■■□□ 2.72
Scn4aQ9ER60 AC117769.4-201ENSMUST00000225679 685 ntBASIC32.06■■■□□ 2.72
Scn4aQ9ER60 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Scn4aQ9ER60 Gm18284-201ENSMUST00000172604 624 ntBASIC32.05■■■□□ 2.72
Scn4aQ9ER60 Gm43445-201ENSMUST00000198564 2091 ntBASIC32.05■■■□□ 2.72
Scn4aQ9ER60 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Scn4aQ9ER60 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Scn4aQ9ER60 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Scn4aQ9ER60 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC32.04■■■□□ 2.72
Scn4aQ9ER60 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC32.03■■■□□ 2.72
Scn4aQ9ER60 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Scn4aQ9ER60 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC32.03■■■□□ 2.72
Scn4aQ9ER60 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC32.03■■■□□ 2.72
Scn4aQ9ER60 Gm8495-201ENSMUST00000188740 694 ntBASIC32.03■■■□□ 2.72
Scn4aQ9ER60 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC32.03■■■□□ 2.72
Scn4aQ9ER60 Gm12821-201ENSMUST00000120022 600 ntBASIC32.02■■■□□ 2.72
Scn4aQ9ER60 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Scn4aQ9ER60 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC32.01■■■□□ 2.72
Scn4aQ9ER60 Gm12922-201ENSMUST00000120626 809 ntBASIC32.01■■■□□ 2.72
Scn4aQ9ER60 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
Scn4aQ9ER60 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
Scn4aQ9ER60 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Scn4aQ9ER60 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC31.99■■■□□ 2.71
Scn4aQ9ER60 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
Scn4aQ9ER60 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
Scn4aQ9ER60 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC31.98■■■□□ 2.71
Scn4aQ9ER60 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC31.98■■■□□ 2.71
Scn4aQ9ER60 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC31.98■■■□□ 2.71
Scn4aQ9ER60 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC31.98■■■□□ 2.71
Scn4aQ9ER60 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC31.98■■■□□ 2.71
Scn4aQ9ER60 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Scn4aQ9ER60 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
Scn4aQ9ER60 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Scn4aQ9ER60 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Scn4aQ9ER60 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Scn4aQ9ER60 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC31.96■■■□□ 2.71
Scn4aQ9ER60 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC31.96■■■□□ 2.71
Scn4aQ9ER60 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC31.95■■■□□ 2.7
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms