Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
Upf1Q9EPU0 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Upf1Q9EPU0 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Upf1Q9EPU0 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC26.62■■□□□ 1.85
Upf1Q9EPU0 Gm12922-201ENSMUST00000120626 809 ntBASIC26.61■■□□□ 1.85
Upf1Q9EPU0 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC26.61■■□□□ 1.85
Upf1Q9EPU0 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Upf1Q9EPU0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
Upf1Q9EPU0 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Upf1Q9EPU0 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
Upf1Q9EPU0 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Upf1Q9EPU0 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Upf1Q9EPU0 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
Upf1Q9EPU0 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Upf1Q9EPU0 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Upf1Q9EPU0 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
Upf1Q9EPU0 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC26.57■■□□□ 1.84
Upf1Q9EPU0 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Upf1Q9EPU0 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Upf1Q9EPU0 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Upf1Q9EPU0 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Upf1Q9EPU0 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Upf1Q9EPU0 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Upf1Q9EPU0 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Upf1Q9EPU0 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
Upf1Q9EPU0 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC26.55■■□□□ 1.84
Upf1Q9EPU0 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
Upf1Q9EPU0 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Upf1Q9EPU0 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Upf1Q9EPU0 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Upf1Q9EPU0 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Upf1Q9EPU0 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Upf1Q9EPU0 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC26.53■■□□□ 1.84
Upf1Q9EPU0 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC26.52■■□□□ 1.84
Upf1Q9EPU0 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Upf1Q9EPU0 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Upf1Q9EPU0 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Upf1Q9EPU0 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Upf1Q9EPU0 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC26.51■■□□□ 1.83
Upf1Q9EPU0 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC26.51■■□□□ 1.83
Upf1Q9EPU0 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Upf1Q9EPU0 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC26.51■■□□□ 1.83
Upf1Q9EPU0 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Upf1Q9EPU0 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
Upf1Q9EPU0 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC26.5■■□□□ 1.83
Upf1Q9EPU0 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Upf1Q9EPU0 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Upf1Q9EPU0 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Upf1Q9EPU0 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Upf1Q9EPU0 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
Upf1Q9EPU0 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC26.47■■□□□ 1.83
Upf1Q9EPU0 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Upf1Q9EPU0 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC26.47■■□□□ 1.83
Upf1Q9EPU0 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Upf1Q9EPU0 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Upf1Q9EPU0 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Upf1Q9EPU0 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC26.47■■□□□ 1.83
Upf1Q9EPU0 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC26.46■■□□□ 1.83
Upf1Q9EPU0 Gm16464-201ENSMUST00000117815 1095 ntBASIC26.46■■□□□ 1.83
Upf1Q9EPU0 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
Upf1Q9EPU0 AC164629.5-201ENSMUST00000220387 632 ntBASIC26.46■■□□□ 1.83
Upf1Q9EPU0 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
Upf1Q9EPU0 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
Upf1Q9EPU0 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC26.46■■□□□ 1.83
Upf1Q9EPU0 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
Upf1Q9EPU0 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC26.45■■□□□ 1.82
Upf1Q9EPU0 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Upf1Q9EPU0 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
Upf1Q9EPU0 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
Upf1Q9EPU0 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Upf1Q9EPU0 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Upf1Q9EPU0 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Upf1Q9EPU0 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
Upf1Q9EPU0 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC26.43■■□□□ 1.82
Upf1Q9EPU0 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
Upf1Q9EPU0 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Upf1Q9EPU0 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Upf1Q9EPU0 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
Upf1Q9EPU0 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Upf1Q9EPU0 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Upf1Q9EPU0 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC26.42■■□□□ 1.82
Upf1Q9EPU0 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Upf1Q9EPU0 Gm14121-201ENSMUST00000121441 1380 ntBASIC26.42■■□□□ 1.82
Upf1Q9EPU0 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC26.41■■□□□ 1.82
Upf1Q9EPU0 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC26.41■■□□□ 1.82
Upf1Q9EPU0 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC26.41■■□□□ 1.82
Upf1Q9EPU0 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC26.41■■□□□ 1.82
Upf1Q9EPU0 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Upf1Q9EPU0 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
Upf1Q9EPU0 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Upf1Q9EPU0 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC26.4■■□□□ 1.82
Upf1Q9EPU0 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Upf1Q9EPU0 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC26.39■■□□□ 1.82
Upf1Q9EPU0 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC26.39■■□□□ 1.82
Upf1Q9EPU0 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC26.39■■□□□ 1.82
Upf1Q9EPU0 AC116713.1-201ENSMUST00000215074 430 ntBASIC26.39■■□□□ 1.82
Upf1Q9EPU0 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Upf1Q9EPU0 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.81
Upf1Q9EPU0 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Upf1Q9EPU0 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
Retrieved 100 of 76,532 protein–RNA pairs in 114.9 ms