Protein–RNA interactions for Protein: Q9DC33

Hmg20a, High mobility group protein 20A, mousemouse

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmg20aQ9DC33 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hmg20aQ9DC33 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hmg20aQ9DC33 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmg20aQ9DC33 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmg20aQ9DC33 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmg20aQ9DC33 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Hmg20aQ9DC33 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmg20aQ9DC33 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
Hmg20aQ9DC33 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmg20aQ9DC33 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmg20aQ9DC33 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmg20aQ9DC33 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmg20aQ9DC33 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmg20aQ9DC33 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hmg20aQ9DC33 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Hmg20aQ9DC33 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Hmg20aQ9DC33 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Hmg20aQ9DC33 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmg20aQ9DC33 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Hmg20aQ9DC33 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hmg20aQ9DC33 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Hmg20aQ9DC33 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Hmg20aQ9DC33 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Hmg20aQ9DC33 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Hmg20aQ9DC33 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Hmg20aQ9DC33 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Hmg20aQ9DC33 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.33■□□□□ 0.84
Hmg20aQ9DC33 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.33■□□□□ 0.84
Hmg20aQ9DC33 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.32■□□□□ 0.84
Hmg20aQ9DC33 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmg20aQ9DC33 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Hmg20aQ9DC33 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Hmg20aQ9DC33 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hmg20aQ9DC33 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Hmg20aQ9DC33 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Hmg20aQ9DC33 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Hmg20aQ9DC33 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmg20aQ9DC33 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmg20aQ9DC33 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Hmg20aQ9DC33 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmg20aQ9DC33 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmg20aQ9DC33 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Hmg20aQ9DC33 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Hmg20aQ9DC33 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmg20aQ9DC33 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmg20aQ9DC33 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmg20aQ9DC33 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Hmg20aQ9DC33 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmg20aQ9DC33 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Hmg20aQ9DC33 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Hmg20aQ9DC33 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Hmg20aQ9DC33 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC20.28■□□□□ 0.84
Hmg20aQ9DC33 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Hmg20aQ9DC33 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Hmg20aQ9DC33 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.27■□□□□ 0.84
Hmg20aQ9DC33 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmg20aQ9DC33 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmg20aQ9DC33 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Hmg20aQ9DC33 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmg20aQ9DC33 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Hmg20aQ9DC33 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmg20aQ9DC33 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmg20aQ9DC33 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmg20aQ9DC33 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmg20aQ9DC33 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmg20aQ9DC33 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Hmg20aQ9DC33 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmg20aQ9DC33 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmg20aQ9DC33 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmg20aQ9DC33 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmg20aQ9DC33 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmg20aQ9DC33 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmg20aQ9DC33 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmg20aQ9DC33 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmg20aQ9DC33 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC20.23■□□□□ 0.83
Hmg20aQ9DC33 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC20.23■□□□□ 0.83
Hmg20aQ9DC33 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmg20aQ9DC33 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Hmg20aQ9DC33 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmg20aQ9DC33 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmg20aQ9DC33 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC20.22■□□□□ 0.83
Hmg20aQ9DC33 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Hmg20aQ9DC33 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Hmg20aQ9DC33 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Hmg20aQ9DC33 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hmg20aQ9DC33 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Hmg20aQ9DC33 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.21■□□□□ 0.83
Hmg20aQ9DC33 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.21■□□□□ 0.83
Hmg20aQ9DC33 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Hmg20aQ9DC33 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Hmg20aQ9DC33 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.21■□□□□ 0.83
Hmg20aQ9DC33 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmg20aQ9DC33 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmg20aQ9DC33 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Hmg20aQ9DC33 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmg20aQ9DC33 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hmg20aQ9DC33 Particl-201ENSMUST00000205370 1560 ntBASIC20.2■□□□□ 0.82
Hmg20aQ9DC33 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Hmg20aQ9DC33 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hmg20aQ9DC33 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms