Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC22.68■■□□□ 1.22
Six4Q61321 Gm27502-201ENSMUST00000183495 199 ntBASIC22.68■■□□□ 1.22
Six4Q61321 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Six4Q61321 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
Six4Q61321 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Six4Q61321 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Six4Q61321 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
Six4Q61321 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Six4Q61321 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Six4Q61321 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC22.65■■□□□ 1.22
Six4Q61321 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Six4Q61321 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Six4Q61321 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC22.65■■□□□ 1.22
Six4Q61321 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC22.65■■□□□ 1.22
Six4Q61321 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Six4Q61321 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Six4Q61321 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Six4Q61321 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Six4Q61321 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Six4Q61321 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC22.63■■□□□ 1.21
Six4Q61321 Gm44428-201ENSMUST00000204474 874 ntBASIC22.63■■□□□ 1.21
Six4Q61321 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Six4Q61321 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Six4Q61321 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Six4Q61321 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Six4Q61321 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC22.62■■□□□ 1.21
Six4Q61321 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Six4Q61321 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Six4Q61321 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Six4Q61321 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
Six4Q61321 Gm7199-201ENSMUST00000118327 1485 ntBASIC22.6■■□□□ 1.21
Six4Q61321 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Six4Q61321 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
Six4Q61321 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Six4Q61321 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Six4Q61321 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC22.59■■□□□ 1.21
Six4Q61321 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Six4Q61321 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Six4Q61321 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
Six4Q61321 H3f3aos-201ENSMUST00000097448 2905 ntBASIC22.59■■□□□ 1.21
Six4Q61321 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC22.58■■□□□ 1.21
Six4Q61321 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC22.58■■□□□ 1.21
Six4Q61321 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Six4Q61321 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Six4Q61321 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Six4Q61321 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Six4Q61321 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Six4Q61321 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC22.57■■□□□ 1.2
Six4Q61321 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC22.57■■□□□ 1.2
Six4Q61321 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Six4Q61321 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
Six4Q61321 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Six4Q61321 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
Six4Q61321 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Six4Q61321 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Six4Q61321 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Six4Q61321 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC22.55■■□□□ 1.2
Six4Q61321 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
Six4Q61321 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Six4Q61321 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Six4Q61321 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Six4Q61321 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Six4Q61321 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
Six4Q61321 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Six4Q61321 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Six4Q61321 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Six4Q61321 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Six4Q61321 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Six4Q61321 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Six4Q61321 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Six4Q61321 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC22.53■■□□□ 1.2
Six4Q61321 Gm12366-201ENSMUST00000121722 873 ntBASIC22.53■■□□□ 1.2
Six4Q61321 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC22.53■■□□□ 1.2
Six4Q61321 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC22.53■■□□□ 1.2
Six4Q61321 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Six4Q61321 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC22.53■■□□□ 1.2
Six4Q61321 Gm5786-201ENSMUST00000085368 882 ntBASIC22.53■■□□□ 1.2
Six4Q61321 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Six4Q61321 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Six4Q61321 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Six4Q61321 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Six4Q61321 Gm14523-201ENSMUST00000117260 558 ntBASIC22.52■■□□□ 1.2
Six4Q61321 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Six4Q61321 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
Six4Q61321 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Six4Q61321 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Six4Q61321 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
Six4Q61321 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC22.5■■□□□ 1.19
Six4Q61321 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC22.5■■□□□ 1.19
Six4Q61321 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Six4Q61321 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Six4Q61321 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Six4Q61321 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Six4Q61321 Gm6934-201ENSMUST00000194780 1905 ntBASIC22.5■■□□□ 1.19
Six4Q61321 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Six4Q61321 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Six4Q61321 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
Six4Q61321 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Six4Q61321 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC22.48■■□□□ 1.19
Six4Q61321 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms