Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv1A0A0B4J1G7 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Trbv1A0A0B4J1G7 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv1A0A0B4J1G7 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv1A0A0B4J1G7 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv1A0A0B4J1G7 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv1A0A0B4J1G7 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv1A0A0B4J1G7 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv1A0A0B4J1G7 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 Gm30023-201ENSMUST00000197970 889 ntBASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Trbv1A0A0B4J1G7 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv1A0A0B4J1G7 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv1A0A0B4J1G7 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv1A0A0B4J1G7 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC17.4■□□□□ 0.38
Trbv1A0A0B4J1G7 Gm9939-201ENSMUST00000067161 1154 ntBASIC17.4■□□□□ 0.38
Trbv1A0A0B4J1G7 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv1A0A0B4J1G7 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv1A0A0B4J1G7 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.39■□□□□ 0.38
Trbv1A0A0B4J1G7 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trbv1A0A0B4J1G7 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trbv1A0A0B4J1G7 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv1A0A0B4J1G7 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Trbv1A0A0B4J1G7 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Trbv1A0A0B4J1G7 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv1A0A0B4J1G7 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv1A0A0B4J1G7 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv1A0A0B4J1G7 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv1A0A0B4J1G7 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv1A0A0B4J1G7 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv1A0A0B4J1G7 Gm42809-201ENSMUST00000198429 1138 ntBASIC17.37■□□□□ 0.37
Trbv1A0A0B4J1G7 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv1A0A0B4J1G7 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv1A0A0B4J1G7 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv1A0A0B4J1G7 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv1A0A0B4J1G7 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv1A0A0B4J1G7 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv1A0A0B4J1G7 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Gm6821-201ENSMUST00000107540 542 ntBASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Notumos-201ENSMUST00000151998 2659 ntBASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv1A0A0B4J1G7 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv1A0A0B4J1G7 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv1A0A0B4J1G7 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Trbv1A0A0B4J1G7 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv1A0A0B4J1G7 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv1A0A0B4J1G7 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv1A0A0B4J1G7 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv1A0A0B4J1G7 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv1A0A0B4J1G7 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
Trbv1A0A0B4J1G7 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv1A0A0B4J1G7 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Trbv1A0A0B4J1G7 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv1A0A0B4J1G7 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trbv1A0A0B4J1G7 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trbv1A0A0B4J1G7 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv1A0A0B4J1G7 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC17.33■□□□□ 0.36
Trbv1A0A0B4J1G7 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv1A0A0B4J1G7 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv1A0A0B4J1G7 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Trbv1A0A0B4J1G7 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv1A0A0B4J1G7 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv1A0A0B4J1G7 AC124392.1-201ENSMUST00000225172 5324 ntBASIC17.32■□□□□ 0.36
Trbv1A0A0B4J1G7 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv1A0A0B4J1G7 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv1A0A0B4J1G7 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv1A0A0B4J1G7 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trbv1A0A0B4J1G7 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trbv1A0A0B4J1G7 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv1A0A0B4J1G7 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trbv1A0A0B4J1G7 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Trbv1A0A0B4J1G7 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv1A0A0B4J1G7 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv1A0A0B4J1G7 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC17.3■□□□□ 0.36
Trbv1A0A0B4J1G7 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC17.3■□□□□ 0.36
Trbv1A0A0B4J1G7 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv1A0A0B4J1G7 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv1A0A0B4J1G7 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv1A0A0B4J1G7 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Trbv1A0A0B4J1G7 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv1A0A0B4J1G7 Gm37847-201ENSMUST00000192163 1497 ntBASIC17.29■□□□□ 0.36
Trbv1A0A0B4J1G7 Gm31748-201ENSMUST00000194938 1497 ntBASIC17.29■□□□□ 0.36
Trbv1A0A0B4J1G7 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Trbv1A0A0B4J1G7 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv1A0A0B4J1G7 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv1A0A0B4J1G7 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms