Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Trbv3A0A0A6YYE2 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv3A0A0A6YYE2 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv3A0A0A6YYE2 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv3A0A0A6YYE2 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv3A0A0A6YYE2 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trbv3A0A0A6YYE2 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv3A0A0A6YYE2 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv3A0A0A6YYE2 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv3A0A0A6YYE2 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv3A0A0A6YYE2 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.24■□□□□ 0.35
Trbv3A0A0A6YYE2 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv3A0A0A6YYE2 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC17.23■□□□□ 0.35
Trbv3A0A0A6YYE2 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv3A0A0A6YYE2 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv3A0A0A6YYE2 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv3A0A0A6YYE2 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv3A0A0A6YYE2 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv3A0A0A6YYE2 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
Trbv3A0A0A6YYE2 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv3A0A0A6YYE2 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv3A0A0A6YYE2 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv3A0A0A6YYE2 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv3A0A0A6YYE2 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv3A0A0A6YYE2 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv3A0A0A6YYE2 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC17.21■□□□□ 0.35
Trbv3A0A0A6YYE2 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
Trbv3A0A0A6YYE2 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trbv3A0A0A6YYE2 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC17.21■□□□□ 0.34
Trbv3A0A0A6YYE2 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Trbv3A0A0A6YYE2 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv3A0A0A6YYE2 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv3A0A0A6YYE2 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv3A0A0A6YYE2 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv3A0A0A6YYE2 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv3A0A0A6YYE2 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv3A0A0A6YYE2 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv3A0A0A6YYE2 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv3A0A0A6YYE2 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv3A0A0A6YYE2 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC17.19■□□□□ 0.34
Trbv3A0A0A6YYE2 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv3A0A0A6YYE2 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv3A0A0A6YYE2 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv3A0A0A6YYE2 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv3A0A0A6YYE2 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv3A0A0A6YYE2 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv3A0A0A6YYE2 Gm32051-202ENSMUST00000197905 2385 ntBASIC17.18■□□□□ 0.34
Trbv3A0A0A6YYE2 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.18■□□□□ 0.34
Trbv3A0A0A6YYE2 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC17.18■□□□□ 0.34
Trbv3A0A0A6YYE2 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv3A0A0A6YYE2 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv3A0A0A6YYE2 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv3A0A0A6YYE2 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trbv3A0A0A6YYE2 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Trbv3A0A0A6YYE2 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trbv3A0A0A6YYE2 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC17.17■□□□□ 0.34
Trbv3A0A0A6YYE2 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trbv3A0A0A6YYE2 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC17.16■□□□□ 0.34
Trbv3A0A0A6YYE2 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv3A0A0A6YYE2 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv3A0A0A6YYE2 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv3A0A0A6YYE2 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv3A0A0A6YYE2 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trbv3A0A0A6YYE2 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv3A0A0A6YYE2 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv3A0A0A6YYE2 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv3A0A0A6YYE2 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Trbv3A0A0A6YYE2 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv3A0A0A6YYE2 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC17.15■□□□□ 0.34
Trbv3A0A0A6YYE2 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trbv3A0A0A6YYE2 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Trbv3A0A0A6YYE2 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Trbv3A0A0A6YYE2 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv3A0A0A6YYE2 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv3A0A0A6YYE2 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv3A0A0A6YYE2 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC17.13■□□□□ 0.33
Trbv3A0A0A6YYE2 Gm9910-201ENSMUST00000195385 1550 ntBASIC17.13■□□□□ 0.33
Trbv3A0A0A6YYE2 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
Trbv3A0A0A6YYE2 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
Trbv3A0A0A6YYE2 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv3A0A0A6YYE2 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trbv3A0A0A6YYE2 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Trbv3A0A0A6YYE2 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv3A0A0A6YYE2 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv3A0A0A6YYE2 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trbv3A0A0A6YYE2 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv3A0A0A6YYE2 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv3A0A0A6YYE2 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv3A0A0A6YYE2 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv3A0A0A6YYE2 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv3A0A0A6YYE2 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 170.4 ms