Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx28Q9CWT6 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx28Q9CWT6 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx28Q9CWT6 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx28Q9CWT6 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx28Q9CWT6 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
Ddx28Q9CWT6 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx28Q9CWT6 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.81■□□□□ 0.92
Ddx28Q9CWT6 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx28Q9CWT6 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx28Q9CWT6 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ddx28Q9CWT6 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddx28Q9CWT6 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx28Q9CWT6 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx28Q9CWT6 Gm37136-201ENSMUST00000194368 194 ntBASIC20.78■□□□□ 0.92
Ddx28Q9CWT6 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC20.78■□□□□ 0.92
Ddx28Q9CWT6 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddx28Q9CWT6 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.78■□□□□ 0.92
Ddx28Q9CWT6 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx28Q9CWT6 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx28Q9CWT6 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
Ddx28Q9CWT6 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx28Q9CWT6 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx28Q9CWT6 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ddx28Q9CWT6 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ddx28Q9CWT6 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx28Q9CWT6 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Ddx28Q9CWT6 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Ddx28Q9CWT6 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ddx28Q9CWT6 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx28Q9CWT6 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Ddx28Q9CWT6 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx28Q9CWT6 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx28Q9CWT6 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx28Q9CWT6 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx28Q9CWT6 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx28Q9CWT6 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx28Q9CWT6 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx28Q9CWT6 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx28Q9CWT6 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.74■□□□□ 0.91
Ddx28Q9CWT6 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddx28Q9CWT6 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddx28Q9CWT6 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddx28Q9CWT6 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
Ddx28Q9CWT6 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Ddx28Q9CWT6 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx28Q9CWT6 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx28Q9CWT6 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Ddx28Q9CWT6 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx28Q9CWT6 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Ddx28Q9CWT6 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx28Q9CWT6 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx28Q9CWT6 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx28Q9CWT6 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Ddx28Q9CWT6 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.7■□□□□ 0.9
Ddx28Q9CWT6 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddx28Q9CWT6 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.7■□□□□ 0.9
Ddx28Q9CWT6 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddx28Q9CWT6 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddx28Q9CWT6 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Ddx28Q9CWT6 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddx28Q9CWT6 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddx28Q9CWT6 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Ddx28Q9CWT6 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ddx28Q9CWT6 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.68■□□□□ 0.9
Ddx28Q9CWT6 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ddx28Q9CWT6 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddx28Q9CWT6 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddx28Q9CWT6 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddx28Q9CWT6 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx28Q9CWT6 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx28Q9CWT6 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx28Q9CWT6 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Ddx28Q9CWT6 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx28Q9CWT6 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx28Q9CWT6 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Ddx28Q9CWT6 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx28Q9CWT6 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
Ddx28Q9CWT6 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Ddx28Q9CWT6 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx28Q9CWT6 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx28Q9CWT6 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx28Q9CWT6 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.65■□□□□ 0.9
Ddx28Q9CWT6 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.65■□□□□ 0.9
Ddx28Q9CWT6 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx28Q9CWT6 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx28Q9CWT6 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC20.65■□□□□ 0.9
Ddx28Q9CWT6 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.65■□□□□ 0.9
Ddx28Q9CWT6 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Ddx28Q9CWT6 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx28Q9CWT6 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx28Q9CWT6 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Ddx28Q9CWT6 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddx28Q9CWT6 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Ddx28Q9CWT6 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx28Q9CWT6 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx28Q9CWT6 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx28Q9CWT6 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx28Q9CWT6 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddx28Q9CWT6 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms