Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim40Q3UWA4 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim40Q3UWA4 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC21.1■□□□□ 0.97
Trim40Q3UWA4 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim40Q3UWA4 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.1■□□□□ 0.97
Trim40Q3UWA4 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.1■□□□□ 0.97
Trim40Q3UWA4 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim40Q3UWA4 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim40Q3UWA4 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC21.09■□□□□ 0.97
Trim40Q3UWA4 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim40Q3UWA4 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim40Q3UWA4 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim40Q3UWA4 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim40Q3UWA4 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim40Q3UWA4 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim40Q3UWA4 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.08■□□□□ 0.96
Trim40Q3UWA4 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim40Q3UWA4 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim40Q3UWA4 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC21.07■□□□□ 0.96
Trim40Q3UWA4 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim40Q3UWA4 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim40Q3UWA4 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim40Q3UWA4 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim40Q3UWA4 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim40Q3UWA4 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim40Q3UWA4 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim40Q3UWA4 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim40Q3UWA4 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim40Q3UWA4 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim40Q3UWA4 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim40Q3UWA4 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim40Q3UWA4 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim40Q3UWA4 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Trim40Q3UWA4 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim40Q3UWA4 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim40Q3UWA4 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim40Q3UWA4 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim40Q3UWA4 Gm6934-201ENSMUST00000194780 1905 ntBASIC21.04■□□□□ 0.96
Trim40Q3UWA4 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim40Q3UWA4 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim40Q3UWA4 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Trim40Q3UWA4 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC21.03■□□□□ 0.96
Trim40Q3UWA4 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim40Q3UWA4 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim40Q3UWA4 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Trim40Q3UWA4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Trim40Q3UWA4 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim40Q3UWA4 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trim40Q3UWA4 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trim40Q3UWA4 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC21.01■□□□□ 0.95
Trim40Q3UWA4 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim40Q3UWA4 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim40Q3UWA4 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC21■□□□□ 0.95
Trim40Q3UWA4 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim40Q3UWA4 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trim40Q3UWA4 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.99■□□□□ 0.95
Trim40Q3UWA4 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim40Q3UWA4 Gm45855-201ENSMUST00000212546 880 ntBASIC20.99■□□□□ 0.95
Trim40Q3UWA4 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim40Q3UWA4 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
Trim40Q3UWA4 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.98■□□□□ 0.95
Trim40Q3UWA4 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim40Q3UWA4 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.98■□□□□ 0.95
Trim40Q3UWA4 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trim40Q3UWA4 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim40Q3UWA4 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim40Q3UWA4 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim40Q3UWA4 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.98■□□□□ 0.95
Trim40Q3UWA4 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Trim40Q3UWA4 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim40Q3UWA4 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim40Q3UWA4 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim40Q3UWA4 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim40Q3UWA4 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim40Q3UWA4 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Trim40Q3UWA4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trim40Q3UWA4 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Trim40Q3UWA4 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim40Q3UWA4 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC20.95■□□□□ 0.94
Trim40Q3UWA4 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim40Q3UWA4 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.95■□□□□ 0.94
Trim40Q3UWA4 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim40Q3UWA4 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim40Q3UWA4 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.95■□□□□ 0.94
Trim40Q3UWA4 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trim40Q3UWA4 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim40Q3UWA4 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Trim40Q3UWA4 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
Trim40Q3UWA4 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim40Q3UWA4 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim40Q3UWA4 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim40Q3UWA4 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim40Q3UWA4 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim40Q3UWA4 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Trim40Q3UWA4 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.92■□□□□ 0.94
Trim40Q3UWA4 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim40Q3UWA4 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim40Q3UWA4 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Trim40Q3UWA4 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim40Q3UWA4 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 64.1 ms