Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6-3Q5R1E6 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC18.23■□□□□ 0.51
Trav6-3Q5R1E6 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6-3Q5R1E6 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6-3Q5R1E6 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6-3Q5R1E6 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6-3Q5R1E6 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-3Q5R1E6 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-3Q5R1E6 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC18.21■□□□□ 0.51
Trav6-3Q5R1E6 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.21■□□□□ 0.51
Trav6-3Q5R1E6 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6-3Q5R1E6 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Trav6-3Q5R1E6 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6-3Q5R1E6 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6-3Q5R1E6 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC18.2■□□□□ 0.5
Trav6-3Q5R1E6 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6-3Q5R1E6 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-3Q5R1E6 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-3Q5R1E6 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-3Q5R1E6 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-3Q5R1E6 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6-3Q5R1E6 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trav6-3Q5R1E6 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6-3Q5R1E6 Gm9939-201ENSMUST00000067161 1154 ntBASIC18.18■□□□□ 0.5
Trav6-3Q5R1E6 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6-3Q5R1E6 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6-3Q5R1E6 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trav6-3Q5R1E6 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trav6-3Q5R1E6 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6-3Q5R1E6 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Trav6-3Q5R1E6 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-3Q5R1E6 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-3Q5R1E6 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.16■□□□□ 0.5
Trav6-3Q5R1E6 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-3Q5R1E6 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-3Q5R1E6 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC18.16■□□□□ 0.5
Trav6-3Q5R1E6 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-3Q5R1E6 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-3Q5R1E6 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6-3Q5R1E6 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trav6-3Q5R1E6 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC18.15■□□□□ 0.5
Trav6-3Q5R1E6 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.5
Trav6-3Q5R1E6 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trav6-3Q5R1E6 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6-3Q5R1E6 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6-3Q5R1E6 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
Trav6-3Q5R1E6 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6-3Q5R1E6 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6-3Q5R1E6 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
Trav6-3Q5R1E6 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6-3Q5R1E6 Gm6821-201ENSMUST00000107540 542 ntBASIC18.13■□□□□ 0.49
Trav6-3Q5R1E6 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6-3Q5R1E6 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6-3Q5R1E6 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6-3Q5R1E6 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trav6-3Q5R1E6 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Trav6-3Q5R1E6 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6-3Q5R1E6 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Trav6-3Q5R1E6 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6-3Q5R1E6 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6-3Q5R1E6 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-3Q5R1E6 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-3Q5R1E6 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-3Q5R1E6 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-3Q5R1E6 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-3Q5R1E6 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6-3Q5R1E6 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6-3Q5R1E6 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6-3Q5R1E6 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6-3Q5R1E6 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6-3Q5R1E6 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6-3Q5R1E6 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6-3Q5R1E6 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6-3Q5R1E6 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6-3Q5R1E6 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6-3Q5R1E6 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC18.09■□□□□ 0.49
Trav6-3Q5R1E6 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6-3Q5R1E6 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trav6-3Q5R1E6 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trav6-3Q5R1E6 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6-3Q5R1E6 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6-3Q5R1E6 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6-3Q5R1E6 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6-3Q5R1E6 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6-3Q5R1E6 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6-3Q5R1E6 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Trav6-3Q5R1E6 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-3Q5R1E6 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-3Q5R1E6 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-3Q5R1E6 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 AC131739.1-201ENSMUST00000221692 1245 ntBASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-3Q5R1E6 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms