Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim40Q3UWA4 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Trim40Q3UWA4 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim40Q3UWA4 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.3■■□□□ 1
Trim40Q3UWA4 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Trim40Q3UWA4 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim40Q3UWA4 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trim40Q3UWA4 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
Trim40Q3UWA4 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim40Q3UWA4 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim40Q3UWA4 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Trim40Q3UWA4 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim40Q3UWA4 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim40Q3UWA4 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim40Q3UWA4 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim40Q3UWA4 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim40Q3UWA4 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim40Q3UWA4 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim40Q3UWA4 Zfp131-205ENSMUST00000223812 663 ntBASIC21.26■□□□□ 0.99
Trim40Q3UWA4 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.26■□□□□ 0.99
Trim40Q3UWA4 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim40Q3UWA4 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim40Q3UWA4 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim40Q3UWA4 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
Trim40Q3UWA4 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
Trim40Q3UWA4 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC21.25■□□□□ 0.99
Trim40Q3UWA4 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim40Q3UWA4 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim40Q3UWA4 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim40Q3UWA4 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim40Q3UWA4 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC21.24■□□□□ 0.99
Trim40Q3UWA4 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim40Q3UWA4 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim40Q3UWA4 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim40Q3UWA4 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim40Q3UWA4 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC21.23■□□□□ 0.99
Trim40Q3UWA4 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim40Q3UWA4 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim40Q3UWA4 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim40Q3UWA4 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim40Q3UWA4 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trim40Q3UWA4 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim40Q3UWA4 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim40Q3UWA4 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim40Q3UWA4 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim40Q3UWA4 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Trim40Q3UWA4 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim40Q3UWA4 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim40Q3UWA4 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21.2■□□□□ 0.98
Trim40Q3UWA4 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim40Q3UWA4 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim40Q3UWA4 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.2■□□□□ 0.98
Trim40Q3UWA4 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Trim40Q3UWA4 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim40Q3UWA4 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim40Q3UWA4 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim40Q3UWA4 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim40Q3UWA4 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC21.18■□□□□ 0.98
Trim40Q3UWA4 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim40Q3UWA4 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim40Q3UWA4 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
Trim40Q3UWA4 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC21.17■□□□□ 0.98
Trim40Q3UWA4 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim40Q3UWA4 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim40Q3UWA4 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim40Q3UWA4 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trim40Q3UWA4 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Trim40Q3UWA4 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim40Q3UWA4 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim40Q3UWA4 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC21.16■□□□□ 0.98
Trim40Q3UWA4 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.15■□□□□ 0.98
Trim40Q3UWA4 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim40Q3UWA4 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim40Q3UWA4 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.15■□□□□ 0.98
Trim40Q3UWA4 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim40Q3UWA4 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Trim40Q3UWA4 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.15■□□□□ 0.98
Trim40Q3UWA4 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim40Q3UWA4 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Trim40Q3UWA4 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Trim40Q3UWA4 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim40Q3UWA4 Gm9397-201ENSMUST00000200125 605 ntBASIC21.14■□□□□ 0.97
Trim40Q3UWA4 Tdp2-203ENSMUST00000223804 1136 ntBASIC21.14■□□□□ 0.97
Trim40Q3UWA4 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trim40Q3UWA4 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Trim40Q3UWA4 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim40Q3UWA4 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim40Q3UWA4 Gm24970-201ENSMUST00000175582 82 ntBASIC21.13■□□□□ 0.97
Trim40Q3UWA4 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim40Q3UWA4 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim40Q3UWA4 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim40Q3UWA4 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim40Q3UWA4 Gm30023-201ENSMUST00000197970 889 ntBASIC21.12■□□□□ 0.97
Trim40Q3UWA4 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Trim40Q3UWA4 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim40Q3UWA4 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim40Q3UWA4 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim40Q3UWA4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim40Q3UWA4 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC21.11■□□□□ 0.97
Trim40Q3UWA4 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms