Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.35■■□□□ 1.01
Nkx3-2P97503 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Nkx3-2P97503 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Nkx3-2P97503 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx3-2P97503 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx3-2P97503 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx3-2P97503 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx3-2P97503 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx3-2P97503 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Nkx3-2P97503 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Nkx3-2P97503 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nkx3-2P97503 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nkx3-2P97503 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nkx3-2P97503 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC21.33■■□□□ 1.01
Nkx3-2P97503 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Nkx3-2P97503 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nkx3-2P97503 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Nkx3-2P97503 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Nkx3-2P97503 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC21.32■■□□□ 1
Nkx3-2P97503 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Nkx3-2P97503 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.31■■□□□ 1
Nkx3-2P97503 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.31■■□□□ 1
Nkx3-2P97503 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nkx3-2P97503 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nkx3-2P97503 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC21.31■■□□□ 1
Nkx3-2P97503 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nkx3-2P97503 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC21.31■■□□□ 1
Nkx3-2P97503 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Nkx3-2P97503 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Nkx3-2P97503 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.3■■□□□ 1
Nkx3-2P97503 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Nkx3-2P97503 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC21.3■■□□□ 1
Nkx3-2P97503 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Nkx3-2P97503 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC21.3■■□□□ 1
Nkx3-2P97503 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.3■■□□□ 1
Nkx3-2P97503 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nkx3-2P97503 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Nkx3-2P97503 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nkx3-2P97503 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.29■■□□□ 1
Nkx3-2P97503 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Nkx3-2P97503 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nkx3-2P97503 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nkx3-2P97503 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nkx3-2P97503 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nkx3-2P97503 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nkx3-2P97503 Terc-201ENSMUST00000082862 423 ntBASIC21.27■■□□□ 1
Nkx3-2P97503 Gm4419-202ENSMUST00000226239 1431 ntBASIC21.27■■□□□ 1
Nkx3-2P97503 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nkx3-2P97503 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nkx3-2P97503 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Nkx3-2P97503 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nkx3-2P97503 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.25■□□□□ 0.99
Nkx3-2P97503 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nkx3-2P97503 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Nkx3-2P97503 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Nkx3-2P97503 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Nkx3-2P97503 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC21.24■□□□□ 0.99
Nkx3-2P97503 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Nkx3-2P97503 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Nkx3-2P97503 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx3-2P97503 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
Nkx3-2P97503 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Nkx3-2P97503 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nkx3-2P97503 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx3-2P97503 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.22■□□□□ 0.99
Nkx3-2P97503 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx3-2P97503 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx3-2P97503 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
Nkx3-2P97503 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx3-2P97503 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx3-2P97503 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
Nkx3-2P97503 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx3-2P97503 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nkx3-2P97503 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx3-2P97503 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Nkx3-2P97503 Gm14523-201ENSMUST00000117260 558 ntBASIC21.21■□□□□ 0.99
Nkx3-2P97503 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx3-2P97503 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Nkx3-2P97503 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Nkx3-2P97503 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Nkx3-2P97503 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.21■□□□□ 0.99
Nkx3-2P97503 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx3-2P97503 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx3-2P97503 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx3-2P97503 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nkx3-2P97503 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx3-2P97503 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx3-2P97503 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.19■□□□□ 0.98
Nkx3-2P97503 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC21.19■□□□□ 0.98
Nkx3-2P97503 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx3-2P97503 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx3-2P97503 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.19■□□□□ 0.98
Nkx3-2P97503 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nkx3-2P97503 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Nkx3-2P97503 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx3-2P97503 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx3-2P97503 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx3-2P97503 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx3-2P97503 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nkx3-2P97503 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms