Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Cpsf4Q8BQZ5 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cpsf4Q8BQZ5 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
Cpsf4Q8BQZ5 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cpsf4Q8BQZ5 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cpsf4Q8BQZ5 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cpsf4Q8BQZ5 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Cpsf4Q8BQZ5 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cpsf4Q8BQZ5 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cpsf4Q8BQZ5 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cpsf4Q8BQZ5 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cpsf4Q8BQZ5 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cpsf4Q8BQZ5 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Cpsf4Q8BQZ5 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Cpsf4Q8BQZ5 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Cpsf4Q8BQZ5 Gm37847-201ENSMUST00000192163 1497 ntBASIC22.09■■□□□ 1.13
Cpsf4Q8BQZ5 Gm31748-201ENSMUST00000194938 1497 ntBASIC22.09■■□□□ 1.13
Cpsf4Q8BQZ5 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cpsf4Q8BQZ5 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC22.08■■□□□ 1.13
Cpsf4Q8BQZ5 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Cpsf4Q8BQZ5 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC22.08■■□□□ 1.13
Cpsf4Q8BQZ5 Particl-201ENSMUST00000205370 1560 ntBASIC22.08■■□□□ 1.12
Cpsf4Q8BQZ5 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Cpsf4Q8BQZ5 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Cpsf4Q8BQZ5 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Cpsf4Q8BQZ5 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Cpsf4Q8BQZ5 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cpsf4Q8BQZ5 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cpsf4Q8BQZ5 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cpsf4Q8BQZ5 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Cpsf4Q8BQZ5 AC131739.1-201ENSMUST00000221692 1245 ntBASIC22.06■■□□□ 1.12
Cpsf4Q8BQZ5 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Cpsf4Q8BQZ5 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
Cpsf4Q8BQZ5 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
Cpsf4Q8BQZ5 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Cpsf4Q8BQZ5 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Cpsf4Q8BQZ5 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cpsf4Q8BQZ5 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Cpsf4Q8BQZ5 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cpsf4Q8BQZ5 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cpsf4Q8BQZ5 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cpsf4Q8BQZ5 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Cpsf4Q8BQZ5 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cpsf4Q8BQZ5 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cpsf4Q8BQZ5 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Cpsf4Q8BQZ5 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC22.03■■□□□ 1.12
Cpsf4Q8BQZ5 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Cpsf4Q8BQZ5 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Cpsf4Q8BQZ5 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC22.03■■□□□ 1.12
Cpsf4Q8BQZ5 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cpsf4Q8BQZ5 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cpsf4Q8BQZ5 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cpsf4Q8BQZ5 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cpsf4Q8BQZ5 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.11
Cpsf4Q8BQZ5 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Cpsf4Q8BQZ5 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Cpsf4Q8BQZ5 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cpsf4Q8BQZ5 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC22.01■■□□□ 1.11
Cpsf4Q8BQZ5 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Cpsf4Q8BQZ5 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cpsf4Q8BQZ5 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC22■■□□□ 1.11
Cpsf4Q8BQZ5 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC22■■□□□ 1.11
Cpsf4Q8BQZ5 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Cpsf4Q8BQZ5 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
Cpsf4Q8BQZ5 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Cpsf4Q8BQZ5 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Cpsf4Q8BQZ5 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Cpsf4Q8BQZ5 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cpsf4Q8BQZ5 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cpsf4Q8BQZ5 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Cpsf4Q8BQZ5 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cpsf4Q8BQZ5 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cpsf4Q8BQZ5 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cpsf4Q8BQZ5 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.97■■□□□ 1.11
Cpsf4Q8BQZ5 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Cpsf4Q8BQZ5 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cpsf4Q8BQZ5 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cpsf4Q8BQZ5 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cpsf4Q8BQZ5 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cpsf4Q8BQZ5 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cpsf4Q8BQZ5 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Cpsf4Q8BQZ5 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
Cpsf4Q8BQZ5 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Cpsf4Q8BQZ5 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cpsf4Q8BQZ5 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Cpsf4Q8BQZ5 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cpsf4Q8BQZ5 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
Cpsf4Q8BQZ5 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cpsf4Q8BQZ5 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cpsf4Q8BQZ5 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cpsf4Q8BQZ5 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cpsf4Q8BQZ5 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
Cpsf4Q8BQZ5 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cpsf4Q8BQZ5 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Cpsf4Q8BQZ5 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Cpsf4Q8BQZ5 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Cpsf4Q8BQZ5 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Cpsf4Q8BQZ5 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.89■■□□□ 1.09
Cpsf4Q8BQZ5 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
Cpsf4Q8BQZ5 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms